Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15p20
         (541 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.04 |ssu72||phosphoric ester hydrolase |Schizosaccharomyc...   142   4e-35
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch...    25   5.4  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    25   5.4  
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    25   5.4  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    25   7.2  

>SPAC3G9.04 |ssu72||phosphoric ester hydrolase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 197

 Score =  142 bits (343), Expect = 4e-35
 Identities = 63/118 (53%), Positives = 84/118 (71%)
 Frame = +1

Query: 178 SDLYVAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDE 357
           ++L ++V+C+SN NRSMEAH  L   G+ V S+GTG  V+LPG S D+PN Y+FG  YDE
Sbjct: 5   TNLQISVICASNQNRSMEAHNVLKNAGYQVDSFGTGSAVRLPGPSIDKPNIYQFGYPYDE 64

Query: 358 IYNDLMEKDKNYYTQNGLLHMLDRNRRIKPCPEKFQVCNERFDVIITCEERVYDQVIE 531
           IY +L  +D   YT NGLL MLDRNRRIK  P ++Q  +  ++++ITCEER YD + E
Sbjct: 65  IYKELEAQDSRLYTANGLLKMLDRNRRIKRAPCRWQDQDSIYNIVITCEERCYDAICE 122


>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 632

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +1

Query: 310 SADRPNCYEFGVLYDEIYNDLMEKDKNYYTQNGL 411
           S D+ N ++F + +DE    L   + N++  N L
Sbjct: 587 SNDKQNTHDFQISHDENLIQLFNDESNFFNLNDL 620


>SPBC119.07 |ppk19||serine/threonine protein kinase
           Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = +1

Query: 310 SADRPN--CYEFGVLYDEIYNDLMEKDKN 390
           SA +PN  C  +G   D+IY D+M  + N
Sbjct: 316 SAKQPNDACSLYGSRIDDIYRDIMPPNNN 344


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 534 PFNYLIIYSFFTSYYDIKSFITHLKFF 454
           PF+YLI+Y FF     ++  +T L FF
Sbjct: 344 PFSYLILYYFFLDISKLQ--MTSLTFF 368


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1822

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +1

Query: 418 MLDRNRRIKPCPEKFQVCNERFDVIITCEERVYDQVIEWF 537
           +L RN  + P P+ F+VC + F +++      + Q IE F
Sbjct: 467 VLSRNA-VSPVPQVFEVCCDIFYLMVFSLRAHFKQEIEVF 505


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,035,923
Number of Sequences: 5004
Number of extensions: 38153
Number of successful extensions: 69
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)