Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc15p20
(541 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC008070-1|AAH08070.1| 194|Homo sapiens SSU72 RNA polymerase II... 182 5e-46
AL645728-3|CAI22947.1| 194|Homo sapiens SSU72 RNA polymerase II... 182 5e-46
AL645728-2|CAI22946.1| 162|Homo sapiens SSU72 RNA polymerase II... 182 5e-46
AK001809-1|BAA91921.1| 194|Homo sapiens protein ( Homo sapiens ... 182 5e-46
AJ276409-1|CAC81713.1| 194|Homo sapiens hypothetical protein pr... 182 5e-46
AF277178-1|AAK07538.1| 194|Homo sapiens PNAS-120 protein. 182 5e-46
AL645728-1|CAI22945.1| 153|Homo sapiens SSU72 RNA polymerase II... 104 2e-22
AK023110-1|BAB14410.1| 153|Homo sapiens protein ( Homo sapiens ... 104 2e-22
AL645728-4|CAI22948.1| 111|Homo sapiens SSU72 RNA polymerase II... 68 2e-11
>BC008070-1|AAH08070.1| 194|Homo sapiens SSU72 RNA polymerase II
CTD phosphatase homolog (S. cerevisiae) protein.
Length = 194
Score = 182 bits (444), Expect = 5e-46
Identities = 80/118 (67%), Positives = 97/118 (82%)
Frame = +1
Query: 178 SDLYVAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDE 357
S L VAVVCSSN NRSMEAH L K+GF+V+S+GTG VKLPG + D+PN Y+F YD+
Sbjct: 4 SPLRVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQ 63
Query: 358 IYNDLMEKDKNYYTQNGLLHMLDRNRRIKPCPEKFQVCNERFDVIITCEERVYDQVIE 531
+YNDL+ KDK YTQNG+LHMLDRN+RIKP PE+FQ C + FD+I+TCEERVYDQV+E
Sbjct: 64 MYNDLLRKDKELYTQNGILHMLDRNKRIKPRPERFQNCKDLFDLILTCEERVYDQVVE 121
>AL645728-3|CAI22947.1| 194|Homo sapiens SSU72 RNA polymerase II
CTD phosphatase homolog (S. cerevisiae) protein.
Length = 194
Score = 182 bits (444), Expect = 5e-46
Identities = 80/118 (67%), Positives = 97/118 (82%)
Frame = +1
Query: 178 SDLYVAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDE 357
S L VAVVCSSN NRSMEAH L K+GF+V+S+GTG VKLPG + D+PN Y+F YD+
Sbjct: 4 SPLRVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQ 63
Query: 358 IYNDLMEKDKNYYTQNGLLHMLDRNRRIKPCPEKFQVCNERFDVIITCEERVYDQVIE 531
+YNDL+ KDK YTQNG+LHMLDRN+RIKP PE+FQ C + FD+I+TCEERVYDQV+E
Sbjct: 64 MYNDLLRKDKELYTQNGILHMLDRNKRIKPRPERFQNCKDLFDLILTCEERVYDQVVE 121
>AL645728-2|CAI22946.1| 162|Homo sapiens SSU72 RNA polymerase II
CTD phosphatase homolog (S. cerevisiae) protein.
Length = 162
Score = 182 bits (444), Expect = 5e-46
Identities = 80/118 (67%), Positives = 97/118 (82%)
Frame = +1
Query: 178 SDLYVAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDE 357
S L VAVVCSSN NRSMEAH L K+GF+V+S+GTG VKLPG + D+PN Y+F YD+
Sbjct: 4 SPLRVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQ 63
Query: 358 IYNDLMEKDKNYYTQNGLLHMLDRNRRIKPCPEKFQVCNERFDVIITCEERVYDQVIE 531
+YNDL+ KDK YTQNG+LHMLDRN+RIKP PE+FQ C + FD+I+TCEERVYDQV+E
Sbjct: 64 MYNDLLRKDKELYTQNGILHMLDRNKRIKPRPERFQNCKDLFDLILTCEERVYDQVVE 121
>AK001809-1|BAA91921.1| 194|Homo sapiens protein ( Homo sapiens
cDNA FLJ10947 fis, clone PLACE1000066, weakly similar to
SSU72 PROTEIN. ).
Length = 194
Score = 182 bits (444), Expect = 5e-46
Identities = 80/118 (67%), Positives = 97/118 (82%)
Frame = +1
Query: 178 SDLYVAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDE 357
S L VAVVCSSN NRSMEAH L K+GF+V+S+GTG VKLPG + D+PN Y+F YD+
Sbjct: 4 SPLRVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQ 63
Query: 358 IYNDLMEKDKNYYTQNGLLHMLDRNRRIKPCPEKFQVCNERFDVIITCEERVYDQVIE 531
+YNDL+ KDK YTQNG+LHMLDRN+RIKP PE+FQ C + FD+I+TCEERVYDQV+E
Sbjct: 64 MYNDLLRKDKELYTQNGILHMLDRNKRIKPRPERFQNCKDLFDLILTCEERVYDQVVE 121
>AJ276409-1|CAC81713.1| 194|Homo sapiens hypothetical protein
protein.
Length = 194
Score = 182 bits (444), Expect = 5e-46
Identities = 80/118 (67%), Positives = 97/118 (82%)
Frame = +1
Query: 178 SDLYVAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDE 357
S L VAVVCSSN NRSMEAH L K+GF+V+S+GTG VKLPG + D+PN Y+F YD+
Sbjct: 4 SPLRVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQ 63
Query: 358 IYNDLMEKDKNYYTQNGLLHMLDRNRRIKPCPEKFQVCNERFDVIITCEERVYDQVIE 531
+YNDL+ KDK YTQNG+LHMLDRN+RIKP PE+FQ C + FD+I+TCEERVYDQV+E
Sbjct: 64 MYNDLLRKDKELYTQNGILHMLDRNKRIKPRPERFQNCKDLFDLILTCEERVYDQVVE 121
>AF277178-1|AAK07538.1| 194|Homo sapiens PNAS-120 protein.
Length = 194
Score = 182 bits (444), Expect = 5e-46
Identities = 80/118 (67%), Positives = 97/118 (82%)
Frame = +1
Query: 178 SDLYVAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDE 357
S L VAVVCSSN NRSMEAH L K+GF+V+S+GTG VKLPG + D+PN Y+F YD+
Sbjct: 4 SPLRVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQ 63
Query: 358 IYNDLMEKDKNYYTQNGLLHMLDRNRRIKPCPEKFQVCNERFDVIITCEERVYDQVIE 531
+YNDL+ KDK YTQNG+LHMLDRN+RIKP PE+FQ C + FD+I+TCEERVYDQV+E
Sbjct: 64 MYNDLLRKDKELYTQNGILHMLDRNKRIKPRPERFQNCKDLFDLILTCEERVYDQVVE 121
>AL645728-1|CAI22945.1| 153|Homo sapiens SSU72 RNA polymerase II
CTD phosphatase homolog (S. cerevisiae) protein.
Length = 153
Score = 104 bits (249), Expect = 2e-22
Identities = 46/73 (63%), Positives = 56/73 (76%)
Frame = +1
Query: 178 SDLYVAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDE 357
S L VAVVCSSN NRSMEAH L K+GF+V+S+GTG VKLPG + D+PN Y+F YD+
Sbjct: 4 SPLRVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQ 63
Query: 358 IYNDLMEKDKNYY 396
+YNDL+ KDK Y
Sbjct: 64 MYNDLLRKDKELY 76
>AK023110-1|BAB14410.1| 153|Homo sapiens protein ( Homo sapiens
cDNA FLJ13048 fis, clone NT2RP3001399, weakly similar to
SSU72 PROTEIN. ).
Length = 153
Score = 104 bits (249), Expect = 2e-22
Identities = 46/73 (63%), Positives = 56/73 (76%)
Frame = +1
Query: 178 SDLYVAVVCSSNMNRSMEAHAFLVKKGFNVKSYGTGEKVKLPGASADRPNCYEFGVLYDE 357
S L VAVVCSSN NRSMEAH L K+GF+V+S+GTG VKLPG + D+PN Y+F YD+
Sbjct: 4 SPLRVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQ 63
Query: 358 IYNDLMEKDKNYY 396
+YNDL+ KDK Y
Sbjct: 64 MYNDLLRKDKELY 76
>AL645728-4|CAI22948.1| 111|Homo sapiens SSU72 RNA polymerase II
CTD phosphatase homolog (S. cerevisiae) protein.
Length = 111
Score = 68.1 bits (159), Expect = 2e-11
Identities = 28/38 (73%), Positives = 34/38 (89%)
Frame = +1
Query: 418 MLDRNRRIKPCPEKFQVCNERFDVIITCEERVYDQVIE 531
MLDRN+RIKP PE+FQ C + FD+I+TCEERVYDQV+E
Sbjct: 1 MLDRNKRIKPRPERFQNCKDLFDLILTCEERVYDQVVE 38
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,137,402
Number of Sequences: 237096
Number of extensions: 1271147
Number of successful extensions: 1687
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1687
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5251598958
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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