Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15p19
         (452 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomy...   167   9e-43
SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase |Schizo...    27   1.0  
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb...    26   2.3  
SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharo...    26   2.3  
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    26   3.1  
SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase |Schizosacch...    25   7.2  
SPAC11D3.09 |||agmatinase |Schizosaccharomyces pombe|chr 1|||Manual    24   9.5  
SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces pomb...    24   9.5  
SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyc...    24   9.5  

>SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 151

 Score =  167 bits (405), Expect = 9e-43
 Identities = 75/122 (61%), Positives = 95/122 (77%)
 Frame = +2

Query: 83  ERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPGL 262
           E+TFI VKPD VQRGL+G II +FE KG+KL  LKF+ PS +L+++HY++   +PF+  L
Sbjct: 4   EQTFIAVKPDAVQRGLIGYIISKFELKGYKLRALKFLVPSRDLVEEHYAEHKGKPFYEKL 63

Query: 263 VKYMSSGPVVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNIIHGSDSVE 442
           V +M+SGPV  M+WEG   VKTGR MLGA+NP DS PGTIRGD  I +GRN+ HGSDS+E
Sbjct: 64  VGFMASGPVCAMIWEGKQAVKTGRLMLGASNPLDSAPGTIRGDYGIDLGRNVCHGSDSIE 123

Query: 443 SA 448
           SA
Sbjct: 124 SA 125


>SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 350

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = -2

Query: 214 EKFF*WPYE--FQTD*FEAFLFETFNNGAHKTTLYTIRLNHNKSTLTLFRHHEILLTCSI 41
           ++F  W Y+  ++ D     L ET N    K    T+RL H    L+LF    +L TC +
Sbjct: 283 DQFTDWLYQRWYEKDKLIDTLLETGNFPGPKKLHTTVRLKHRLEILSLF---SVLFTCIV 339


>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 662

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 168 KPFFSKRSIMVPTRPRCTPSGLT 100
           KPF +KRS ++P RP  T   L+
Sbjct: 512 KPFVNKRSKVLPLRPSVTHDNLS 534


>SPAC1039.07c |||4-aminobutyrate aminotransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
 Frame = +2

Query: 260 LVKYMSSGPVVPMVWEGLNVVKTGRQMLGATNPADSQP--GTIRGDLCIQVGR--NIIH 424
           L++     P++  V  GL +++ G ++   T+P+      GT+ GD C+++G   NI+H
Sbjct: 349 LLRLKDKHPLIVDV-RGLGLLQ-GIEIASCTDPSKPSDFLGTVIGDKCLELGMNCNIVH 405


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -3

Query: 360 AGLVAPSI*RPVFTTLRPSHTIGTTGPELMYFTRPGKKGR 241
           +G + P   RP  T+L P  T+ TT   +    RP  K +
Sbjct: 358 SGSLTPLSSRPAHTSLPPIPTVQTTSSNVPPVNRPSLKSK 397


>SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -3

Query: 171 LKPFFSKRSIMVPTRPRCTPSGLTIIKVRSRCSAIMKYY 55
           ++P+F K + +    P+      T + V+SRC  +  YY
Sbjct: 161 VRPYFYKHADLKQLCPKWNQYLETCVLVQSRCFYVNSYY 199


>SPAC11D3.09 |||agmatinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 394

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -2

Query: 448 SRFNAVRTMDDVTPNLNAEITADS 377
           SR NAV T DD  P  + E  ADS
Sbjct: 28  SRANAVETFDDAFPG-DGETQADS 50


>SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 574

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 290 VPMVWEGLNVVKTGRQMLGATNP 358
           +  V EG N +  GRQ+L  T+P
Sbjct: 388 ITWVSEGANTMDRGRQLLEVTHP 410


>SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 313

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -2

Query: 163 FLFETFNNGAHKTTLYTIRLNHNKSTLTLFR 71
           + ++T NNG +KT   T    + K+   +F+
Sbjct: 174 YFYDTVNNGVYKTGFATTAEAYEKNVRVVFQ 204


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,831,315
Number of Sequences: 5004
Number of extensions: 34672
Number of successful extensions: 100
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)