Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15p09
         (581 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.13c |rpl1601||60S ribosomal protein L13/L16|Schizosaccha...   218   4e-58
SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein L13/L16|Schiz...   218   6e-58
SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein L13/L16|Schizos...   209   2e-55
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    29   0.65 
SPBC13E7.06 |msd1|mug172|spindle pole body protein Msd1|Schizosa...    26   3.5  
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po...    26   3.5  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     26   3.5  
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa...    26   3.5  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    26   4.6  
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po...    25   6.1  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    25   8.1  

>SPBC839.13c |rpl1601||60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score =  218 bits (533), Expect = 4e-58
 Identities = 102/175 (58%), Positives = 125/175 (71%)
 Frame = +2

Query: 41  KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNV 220
           K +VID +GHLLGRLA+V+AK LL G KVVVVRCE++NISG+FFRNKLK +++LRK C  
Sbjct: 6   KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65

Query: 221 NPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXX 400
           NP+RG FHFRAPS+I  K VRGM+PHKT RG+ AL  L+  +G PPPFD           
Sbjct: 66  NPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAAL 125

Query: 401 XXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITK 565
               LKPGR YC VGRLS E+GWKY D+V KLE++RK K+     Y+ KL +  K
Sbjct: 126 RVLRLKPGRKYCTVGRLSSEVGWKYNDIVAKLEERRKVKSA--AFYQAKLAKQKK 178


>SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score =  218 bits (532), Expect = 6e-58
 Identities = 102/175 (58%), Positives = 125/175 (71%)
 Frame = +2

Query: 41  KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNV 220
           K +VID +GHLLGRLA+V+AK LL G KVVVVRCE++NISG+FFRNKLK +++LRK C  
Sbjct: 6   KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65

Query: 221 NPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXX 400
           NP+RG FHFRAPS+I  K VRGM+PHKT RG+ AL  L+  +G PPPFD           
Sbjct: 66  NPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAAL 125

Query: 401 XXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITK 565
               LKPGR YC VGRLS E+GWKY D+V KLE++RK K+     Y+ KL +  K
Sbjct: 126 RVLRLKPGRKYCTVGRLSSEVGWKYSDIVSKLEERRKVKSA--AFYQAKLAKQKK 178


>SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score =  209 bits (511), Expect = 2e-55
 Identities = 92/160 (57%), Positives = 118/160 (73%)
 Frame = +2

Query: 41  KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNV 220
           K ++ID +GHL+GRLA+ +AK LL G KVVVVRCE++NISG+FFRNKLK +++LRK C  
Sbjct: 6   KLVIIDAKGHLMGRLASTVAKQLLAGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65

Query: 221 NPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXX 400
           NP+RG FHFRAPS+I  K VRGM+PHKT RG  AL+ L+  +G PPPFD           
Sbjct: 66  NPSRGAFHFRAPSRIFTKAVRGMLPHKTTRGNIALKNLQALEGIPPPFDKQKRLVVPAAL 125

Query: 401 XXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKA 520
               LKP R YC +GRLS E+GWKY+++V KLE++RK K+
Sbjct: 126 RVLRLKPSRKYCTIGRLSSEVGWKYKNIVSKLEERRKIKS 165


>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 506

 Score = 28.7 bits (61), Expect = 0.65
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +2

Query: 68  HLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFF 172
           H L  + AV  K++  G K VV+RC+ I  + +FF
Sbjct: 157 HHLEDVKAVGKKLIKAGCKNVVIRCDDIPFASDFF 191


>SPBC13E7.06 |msd1|mug172|spindle pole body protein
           Msd1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 331

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 17/46 (36%), Positives = 21/46 (45%)
 Frame = -2

Query: 151 DLFAANHNNFVPFEKDLGDDCRQTAQQMTTAIDHYGLIAKARHFHN 14
           D+ A N       +  L    RQ  QQM T   +YGL+ KAR   N
Sbjct: 126 DVNAKNELTLKALKNQLSVSLRQHEQQMETLKGNYGLV-KARKGRN 170


>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +2

Query: 446 RLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITK 565
           R S E   K  D   K E+KR+ K  K+   EKK K+  K
Sbjct: 428 RKSVESSEKDEDEAAKKEEKRRKKEAKKEKKEKKEKKEKK 467


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -3

Query: 333 SLLRAFLPRSVLCGIIPLTVFHRILDGAL 247
           S L AFLP+  LC +IPL    + L G L
Sbjct: 693 SSLFAFLPQLSLCMLIPLVFGKKNLPGTL 721


>SPAC1B9.02c |sck1||serine/threonine protein kinase
           Sck1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 696

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = -3

Query: 252 ALKWKGPRAGFTLHLLRRNDISLSLFLKKLPEMLICSQRTTTTLFPSRRTLAMTA 88
           AL+  G      ++L+R+ND +    +KK+ + LI  ++  T     R  L  T+
Sbjct: 304 ALRLIGKGTFGQVYLVRKNDTNRIYAMKKISKKLIVRKKEVTHTLGERNILVRTS 358


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -3

Query: 354 GHPSYVRSLLRAFLPRSVLCGIIP 283
           G+ SY+ + L+AFLP++V   + P
Sbjct: 381 GNESYLSNFLKAFLPKTVCDYLFP 404


>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -2

Query: 577 SPASFGDPLKFLFIGNSLNSLALPLVFKLT 488
           +PA F DP KF      L  L   L +KLT
Sbjct: 14  NPAKFSDPYKFEITFECLEPLKSDLEWKLT 43


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +2

Query: 176  NKLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMI 292
            N+ + MS   KRC     RG  HF    + L+  ++ ++
Sbjct: 1323 NRTRQMSVYGKRCCNKSCRGSVHFEYNDEQLYNQIKFLL 1361


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,378,535
Number of Sequences: 5004
Number of extensions: 48055
Number of successful extensions: 122
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)