Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15p06
         (432 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...   119   2e-28
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    28   0.53 
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    26   2.8  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    25   5.0  
SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo...    25   5.0  
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    24   8.7  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score =  119 bits (286), Expect = 2e-28
 Identities = 53/80 (66%), Positives = 64/80 (80%)
 Frame = +3

Query: 189 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 368
           NPLF  RP++F IGQ IQP RDLSRFV+WP+YIR+QR++ +L  RLKVPP I QF +TLD
Sbjct: 24  NPLFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLD 83

Query: 369 KTTAKGLFKILEKYRPETEA 428
           K TA  +FK+L KYRPET A
Sbjct: 84  KNTATQVFKLLNKYRPETAA 103


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 28.3 bits (60), Expect = 0.53
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +2

Query: 224 YWSGHSANS*LVQICKMAQVYPHPASEGCTSASSESAPSDQPIYPDTGQDYS 379
           Y+  +  N  + Q+   A  YP+ +S    SAS  S+P+     P T +  S
Sbjct: 296 YFKENGLNYDIDQLISKAPSYPYSSSRPSASASLASSPTRSAFRPKTSETVS 347


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 303 KAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILE 404
           KAVL   LK  P IN F + L     + +F++LE
Sbjct: 463 KAVLTGILKYWPRINSFKELLFLNEIEDIFEVLE 496


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 21/84 (25%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
 Frame = -2

Query: 404  LQNLEKALSCSLVQCLGKLVDRRGHFQTTLKYS----LLTLDADILGPS-YKSGQVTSWL 240
            L+N ++ L  +L + L  +V++  H  TTL Y+    LL +  + +  S  K    T+++
Sbjct: 1690 LKNSKQELLAALRKLLSTMVEQNDHTCTTLIYTLFEHLLNIYKETINDSDKKEKNETAFM 1749

Query: 239  NALTNSKVLWPLLEER---IHNFL 177
            + +    +  P+L+     +H+FL
Sbjct: 1750 SMVLVLTLAAPILDSEQLVVHDFL 1773


>SPAC1851.03 |ckb1||CK2 family regulatory subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 9/13 (69%), Positives = 13/13 (100%)
 Frame = +3

Query: 375 TAKGLFKILEKYR 413
           TA+GL+K+LEKY+
Sbjct: 94  TAQGLYKMLEKYK 106


>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
          2|||Manual
          Length = 497

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 7  CFGHFRRKFGIRFRSRIFSW 66
          C+G   R+ G+++ S I SW
Sbjct: 26 CYGKSSRELGVKWNSDIRSW 45


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,662,929
Number of Sequences: 5004
Number of extensions: 28614
Number of successful extensions: 91
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)