Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc15p06
(432 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 120 4e-28
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 120 4e-28
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 102 1e-22
07_03_1414 - 26403361-26403969 28 3.7
06_03_0392 + 20318728-20319309,20319596-20319725,20319844-203198... 28 3.7
06_01_0820 + 6202348-6203313 27 4.9
05_03_0573 - 15635338-15635502,15637573-15637632,15637776-15638033 27 4.9
06_01_0821 + 6210368-6211285 27 6.5
11_03_0212 - 11761856-11762037,11762302-11762398,11763571-117645... 27 8.6
07_03_1422 + 26462871-26463434,26463772-26463897 27 8.6
07_03_1413 - 26396426-26396890 27 8.6
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 120 bits (290), Expect = 4e-28
Identities = 53/81 (65%), Positives = 65/81 (80%)
Frame = +3
Query: 189 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 368
NPLFEKRPK F IG + P +DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQFT+TLD
Sbjct: 22 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLD 81
Query: 369 KTTAKGLFKILEKYRPETEAA 431
K A LFK+L KYRPE +AA
Sbjct: 82 KNLATNLFKMLLKYRPEDKAA 102
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 120 bits (290), Expect = 4e-28
Identities = 53/81 (65%), Positives = 65/81 (80%)
Frame = +3
Query: 189 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 368
NPLFEKRPK F IG + P +DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQFT+TLD
Sbjct: 6 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLD 65
Query: 369 KTTAKGLFKILEKYRPETEAA 431
K A LFK+L KYRPE +AA
Sbjct: 66 KNLATNLFKMLLKYRPEDKAA 86
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 102 bits (245), Expect = 1e-22
Identities = 46/79 (58%), Positives = 59/79 (74%)
Frame = +3
Query: 189 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 368
NPLFEKRPK F IG + P +DL RFVRWPK +RIQRQ+ VL++RLKVPP +NQFT+TLD
Sbjct: 23 NPLFEKRPKQFGIGGALPPRKDLHRFVRWPKAVRIQRQRRVLKQRLKVPPALNQFTRTLD 82
Query: 369 KTTAKGLFKILEKYRPETE 425
K ++L++ + E E
Sbjct: 83 KNLGCQKERLLKRAQAEAE 101
>07_03_1414 - 26403361-26403969
Length = 202
Score = 27.9 bits (59), Expect = 3.7
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -2
Query: 296 LDADILGPSYKSGQVTSWLNALTNSKVLWPLLEERIHNFLGLNLFD 159
L A + P + G++ + + +T + L P LEE + GL L+D
Sbjct: 77 LSAAVSNPGFFFGRMVVFNDPVTEGRALPPSLEETVVRAQGLYLYD 122
>06_03_0392 +
20318728-20319309,20319596-20319725,20319844-20319895,
20319995-20320061,20320547-20320633,20322526-20322567,
20322635-20322740,20323155-20323219,20323299-20323343,
20323442-20323549,20323636-20323723,20324147-20324193,
20324355-20324363
Length = 475
Score = 27.9 bits (59), Expect = 3.7
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 287 PHPASEGCTSASSESAPSDQP 349
P PA E +A+ E+APSD P
Sbjct: 53 PQPAPEEAPAAAEEAAPSDDP 73
>06_01_0820 + 6202348-6203313
Length = 321
Score = 27.5 bits (58), Expect = 4.9
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = -1
Query: 339 EGALSDDAEVQPSDAGCGYTWAILQIWTSHELAECPDQ 226
EG S V SDAG GY +A W + +CP Q
Sbjct: 170 EGFCSVRCGVHGSDAGAGYAYA----WVGNAERQCPGQ 203
>05_03_0573 - 15635338-15635502,15637573-15637632,15637776-15638033
Length = 160
Score = 27.5 bits (58), Expect = 4.9
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Frame = +1
Query: 160 SKRLSPRKL*ILS---SRRGQRTLLLVRAFSQLVTCPD 264
S L PR L +L +RRG R L +VRA S V PD
Sbjct: 13 SPSLGPRSLRLLRGALARRGSRRLGVVRAASAEVAAPD 50
>06_01_0821 + 6210368-6211285
Length = 305
Score = 27.1 bits (57), Expect = 6.5
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = -1
Query: 339 EGALSDDAEVQPSDAGCGYTWAILQIWTSHELAECPDQ 226
EG S V SDAG GY +A W +CP Q
Sbjct: 154 EGFCSARCGVHGSDAGAGYAYA----WAGDAERQCPGQ 187
>11_03_0212 -
11761856-11762037,11762302-11762398,11763571-11764545,
11766172-11766263,11766450-11766510
Length = 468
Score = 26.6 bits (56), Expect = 8.6
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Frame = +3
Query: 216 NFAIGQGIQPTRDLSRFVRWPKYIRI-QRQKAVLQRRLKVPPP--INQFTQTLDK-TTAK 383
N +GQ + ++ +V+ Y I Q+ + +L RLK PP + TQ + K K
Sbjct: 352 NSCMGQDEEVVNSINSYVKQKWYAEILQKDRKILTERLKKKPPAWTAKHTQAVKKIKNCK 411
Query: 384 GLFKILEK 407
+L+K
Sbjct: 412 AAKDVLQK 419
>07_03_1422 + 26462871-26463434,26463772-26463897
Length = 229
Score = 26.6 bits (56), Expect = 8.6
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = -2
Query: 296 LDADILGPSYKSGQVTSWLNALTNSKVLWPLLEERIHNFLGLNLFD 159
L + P Y G+V + + +T + L P LEE GL L D
Sbjct: 75 LSTAVSSPGYFFGRVVVFNDPMTEGRALPPSLEETAVRAQGLYLLD 120
>07_03_1413 - 26396426-26396890
Length = 154
Score = 26.6 bits (56), Expect = 8.6
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = -2
Query: 296 LDADILGPSYKSGQVTSWLNALTNSKVLWPLLEERIHNFLGLNLFD 159
L + P Y G+V + + +T + L P LEE GL L D
Sbjct: 29 LSTAVSSPGYFFGRVVVFNDPMTEGRALPPSLEETAVRAQGLYLLD 74
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,112,913
Number of Sequences: 37544
Number of extensions: 200624
Number of successful extensions: 594
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -