Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15p02
         (482 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    30   0.011
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    24   0.74 
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    22   3.0  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   9.1  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 30.3 bits (65), Expect = 0.011
 Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
 Frame = +3

Query: 270 LSSLPKLRILNVSLNKLYNLPR-GFGSFPVLEILDLTYNNLNEKVLPGNFFIMDSLRALY 446
           L  LP L+ILN++ NK+ ++ R  F     LE + L  N L++  + G F  + SL  L 
Sbjct: 498 LWDLPNLQILNLARNKVQHVERYAFERNMRLEAIRLDGNFLSD--INGVFTSIASLLLLN 555

Query: 447 LGDNDFEF 470
           L +N  E+
Sbjct: 556 LSENHIEW 563


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 24.2 bits (50), Expect = 0.74
 Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = -2

Query: 214 LKLASAAGTTE--ILLWLRDRRVMFSRENK 131
           +++A A   TE  I +W ++RR+ + +ENK
Sbjct: 301 IEIAHALCLTERQIKIWFQNRRMKWKKENK 330


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = -2

Query: 214 LKLASAAGTTE--ILLWLRDRRVMFSREN 134
           +++A A   TE  I +W ++RR+ + +EN
Sbjct: 39  IEIAHALCLTERQIKIWFQNRRMKWKKEN 67


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +1

Query: 313 TNCITCQEALVP 348
           T CI+C++  VP
Sbjct: 624 TQCISCRQGTVP 635


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,096
Number of Sequences: 438
Number of extensions: 2586
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13174803
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)