Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15p01
         (495 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   3.1  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   3.1  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    22   4.1  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    21   5.4  
DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    21   9.5  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   9.5  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = +1

Query: 241 IRLTSHEQKNQIFIWNRWNSIILS 312
           I   SH  ++ +FIWN  + ++++
Sbjct: 150 IESLSHTTQDLVFIWNMTDPLVVN 173


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = +1

Query: 202 IGKYVEDLLLR---TAIRLTSHEQKNQIFIWNRW 294
           +G   E L+L    T +++   ++KNQ+ I N W
Sbjct: 42  VGNESEPLVLSFGLTLMQIIDVDEKNQLLITNLW 75


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 9/20 (45%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = -3

Query: 130 HFSRDKDKFSGLP-YKAYPS 74
           HF+  +D F GLP +K  P+
Sbjct: 246 HFTASRDAFYGLPLWKLLPT 265


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -2

Query: 293 HLFQIKIWFFCSWLVSLIAVRSNR 222
           HL   KIW    WL +L     N+
Sbjct: 221 HLRHTKIWLRPDWLFNLTKYGKNQ 244


>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
          protein.
          Length = 104

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +1

Query: 4  LPELLNHHLN 33
          LPE+LN+H N
Sbjct: 57 LPEVLNNHCN 66


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 190 NKCEIGKYVEDLL 228
           N C  G+YV++LL
Sbjct: 618 NFCAFGRYVDNLL 630


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,669
Number of Sequences: 438
Number of extensions: 2776
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13667319
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)