Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc15o08
(432 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228; Eukary... 233 1e-60
UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;... 221 5e-57
UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44; Bi... 208 3e-53
UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6; Tr... 186 2e-46
UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n... 174 6e-43
UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 ... 129 2e-29
UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6; Thermop... 97 2e-19
UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured m... 91 7e-18
UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured m... 91 1e-17
UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 88 6e-17
UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1; ... 83 3e-15
UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13; Euryar... 82 4e-15
UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1; Staphylo... 79 4e-14
UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5; Thermop... 78 9e-14
UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofi... 77 2e-13
UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4; Thermoc... 77 2e-13
UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6; Euryarc... 74 1e-12
UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 74 1e-12
UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus N... 73 3e-12
UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarcha... 72 6e-12
UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella... 69 6e-11
UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1; Nanoarc... 67 2e-10
UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4; Thermop... 62 4e-09
UniRef50_Q78TB4 Cluster: 16 days embryo head cDNA, RIKEN full-le... 40 0.022
UniRef50_Q69NC6 Cluster: Putative uncharacterized protein OJ1742... 36 0.48
UniRef50_Q59LS0 Cluster: Putative uncharacterized protein; n=1; ... 35 0.64
UniRef50_Q54JS8 Cluster: Putative uncharacterized protein; n=1; ... 34 1.1
UniRef50_UPI00015B6051 Cluster: PREDICTED: similar to ENSANGP000... 34 1.5
UniRef50_Q5Y974 Cluster: Structural polyprotein; n=13; Solenopsi... 33 2.6
UniRef50_Q5C2N1 Cluster: SJCHGC03405 protein; n=1; Schistosoma j... 33 3.4
UniRef50_Q1LXZ3 Cluster: Novel protein similar to human and mous... 32 5.9
UniRef50_Q2H9J8 Cluster: Putative uncharacterized protein; n=1; ... 32 5.9
UniRef50_Q2HDI7 Cluster: Putative uncharacterized protein; n=1; ... 31 7.8
>UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228;
Eukaryota|Rep: 60S ribosomal protein L3 - Homo sapiens
(Human)
Length = 403
Score = 233 bits (570), Expect = 1e-60
Identities = 99/123 (80%), Positives = 115/123 (93%)
Frame = +1
Query: 28 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 207
MSHRKFSAPRHGS+GF P+KRS RHRGKVK+FPKDDPSKPVHLTAF+GYKAGMTH+VRE
Sbjct: 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREV 60
Query: 208 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 387
DRPGSK+NKKE+VEAVTI+ETPPMV VG+VGY+ETP GLR TV+AEH+S++C+RRFYK
Sbjct: 61 DRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYK 120
Query: 388 NWY 396
NW+
Sbjct: 121 NWH 123
>UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;
n=1; Caenorhabditis elegans|Rep: Putative
uncharacterized protein rpl-3 - Caenorhabditis elegans
Length = 353
Score = 221 bits (540), Expect = 5e-57
Identities = 93/122 (76%), Positives = 109/122 (89%)
Frame = +1
Query: 28 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 207
MSHRKFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60
Query: 208 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 387
D+PGSK+NKKE+VEAVTI+ETPPMV GV GY++TP G RAL T+WAEH+SE+ RRRFY
Sbjct: 61 DKPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYS 120
Query: 388 NW 393
NW
Sbjct: 121 NW 122
>UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44;
Bilateria|Rep: 60S ribosomal protein L3-like - Homo
sapiens (Human)
Length = 407
Score = 208 bits (509), Expect = 3e-53
Identities = 89/123 (72%), Positives = 108/123 (87%)
Frame = +1
Query: 28 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 207
MSHRKFSAPRHG +GF P KRS RHRGKVK +P+DDPS+PVHLTAF+GYKAGMTH +RE
Sbjct: 1 MSHRKFSAPRHGHLGFLPHKRSHRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREV 60
Query: 208 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 387
RPG KI+K+E VEAVTI+ETPP+V VGVVGY+ TP GLR+ T++AEH+S++CRRRFYK
Sbjct: 61 HRPGLKISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYK 120
Query: 388 NWY 396
+W+
Sbjct: 121 DWH 123
>UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6;
Trypanosomatidae|Rep: Ribosomal protein L3, putative -
Trypanosoma brucei
Length = 480
Score = 186 bits (452), Expect = 2e-46
Identities = 80/124 (64%), Positives = 101/124 (81%)
Frame = +1
Query: 22 SSMSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVR 201
++MSH KF PRHG +GF P+KRSR+ RG+ ++FPKDDPS+ HLT+F+ YKAGMTH+VR
Sbjct: 50 TNMSHCKFEHPRHGHLGFLPRKRSRQIRGRARSFPKDDPSQKPHLTSFMVYKAGMTHIVR 109
Query: 202 EPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRF 381
+ DRPGSK+NKKE+VE VTI+E PPMV VG+VGY +TP G + + TVWA H S + RRRF
Sbjct: 110 DVDRPGSKVNKKEVVEPVTILEAPPMVVVGIVGYRQTPVGHKTIGTVWAHHTSVEFRRRF 169
Query: 382 YKNW 393
YKNW
Sbjct: 170 YKNW 173
>UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n=2;
Rattus norvegicus|Rep: UPI0000503B42 UniRef100 entry -
Rattus norvegicus
Length = 380
Score = 174 bits (424), Expect = 6e-43
Identities = 77/123 (62%), Positives = 96/123 (78%)
Frame = +1
Query: 28 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 207
MS+R FSAPRHGS+GF P+K S H GKVK FPKDD SKPVHLT F+ +KA MTH++++
Sbjct: 1 MSYRNFSAPRHGSLGFSPQKHSCWHHGKVKLFPKDDSSKPVHLTDFLVHKANMTHIIQKV 60
Query: 208 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 387
DRP SK+NKKE+VE V I+ETPPMV +G+VGYIE P GL V+AEH+S ++ FYK
Sbjct: 61 DRPESKMNKKEVVEGVAIVETPPMVVMGIVGYIEIPRGLWTFKAVFAEHISGKSKKCFYK 120
Query: 388 NWY 396
NW+
Sbjct: 121 NWH 123
>UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 TAR
RNA-binding protein B) (TARBP-B).; n=1; Bos taurus|Rep:
60S ribosomal protein L3 (HIV-1 TAR RNA-binding protein
B) (TARBP-B). - Bos Taurus
Length = 340
Score = 129 bits (312), Expect = 2e-29
Identities = 58/97 (59%), Positives = 77/97 (79%)
Frame = +1
Query: 85 KRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIVEAVTII 264
K S +H+GKV FPKD SKPV+L+AF+GY+AGMTHVVR+ DRPGSK++KKE+VE VTI+
Sbjct: 1 KCSSQHQGKVTGFPKDGSSKPVYLSAFLGYQAGMTHVVRKVDRPGSKVHKKEVVEVVTIV 60
Query: 265 ETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRR 375
ET P + VG VG ET GL+ +V+A+H+S +C+R
Sbjct: 61 ETMPFMTVGTVGCTETIWGLQTFKSVFAKHISNECKR 97
>UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6;
Thermoprotei|Rep: 50S ribosomal protein L3P - Aeropyrum
pernix
Length = 344
Score = 96.7 bits (230), Expect = 2e-19
Identities = 57/119 (47%), Positives = 72/119 (60%), Gaps = 2/119 (1%)
Frame = +1
Query: 28 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 207
M RK APR GS+GF P+KR+ R +VK +P+ D KPV L AF+GY+AGMTHV
Sbjct: 1 MGARKKRAPRRGSLGFSPRKRASRLVPRVKRWPEVDIGKPVPL-AFLGYRAGMTHVFMVD 59
Query: 208 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPH-GLRALLTVWAEHMSE-DCRRR 378
DRPG + KEI VTI+ETPPM V Y P+ G +L WA+ E + +RR
Sbjct: 60 DRPGRPTSGKEIFVPVTIVETPPMFVAAVRLYGYDPNRGRYSLGEAWAQPPPELELQRR 118
>UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote HF70_59C08|Rep: Ribosomal
protein L3 - uncultured marine group II euryarchaeote
HF70_59C08
Length = 338
Score = 91.5 bits (217), Expect = 7e-18
Identities = 45/99 (45%), Positives = 62/99 (62%)
Frame = +1
Query: 52 PRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 231
P+ GSMGF P+KR+ R G+VK++P+ D S V + F G+KAGMTHV+ PGS
Sbjct: 7 PKKGSMGFGPRKRANRPYGRVKSWPETD-SDEVRVQGFAGWKAGMTHVMMRDLNPGSPSA 65
Query: 232 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWA 348
E+ +AVT++E PPM + V GY TP+G + WA
Sbjct: 66 GAEVRKAVTVVEVPPMRVLAVRGYKMTPYGKQTAGEAWA 104
>UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote DeepAnt-JyKC7|Rep:
Ribosomal protein L3 - uncultured marine group II
euryarchaeote DeepAnt-JyKC7
Length = 358
Score = 90.6 bits (215), Expect = 1e-17
Identities = 42/103 (40%), Positives = 66/103 (64%)
Frame = +1
Query: 52 PRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 231
P+ GSMGF P+KR+ R G++ ++P+ + S+ + + F G+KAGMTHV+ P S
Sbjct: 7 PKRGSMGFSPRKRAIRPFGRITSWPETESSE-IRVQGFAGWKAGMTHVLMRDTNPHSTSA 65
Query: 232 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMS 360
+EI +AVT++E PPM + V GY TP+G++ +WA+ S
Sbjct: 66 GQEIRKAVTVVEVPPMKVLAVRGYHMTPYGMQTAGEIWADSSS 108
>UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Halobacterium salinarium (Halobacterium halobium)
Length = 335
Score = 88.2 bits (209), Expect = 6e-17
Identities = 46/108 (42%), Positives = 59/108 (54%)
Frame = +1
Query: 52 PRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 231
PR GSMGF P+KR+ + ++P DD V L F GYKAGMTHVV D+ +
Sbjct: 7 PRKGSMGFSPRKRAESEVPRFNSWPADDGE--VGLQGFAGYKAGMTHVVLVDDKANAPTE 64
Query: 232 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRR 375
E VT++ETPPM V Y +TP+G + L VWA+ E R
Sbjct: 65 GMETTVPVTVVETPPMRAAAVRLYEDTPYGKKPLTEVWADDTHESLDR 112
>UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1;
Ignicoccus hospitalis KIN4/I|Rep: LSU ribosomal protein
L3P - Ignicoccus hospitalis KIN4/I
Length = 358
Score = 82.6 bits (195), Expect = 3e-15
Identities = 49/108 (45%), Positives = 62/108 (57%), Gaps = 2/108 (1%)
Frame = +1
Query: 28 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 207
M RK APR GS G P+KR+ +V+++P D KP+ AF+GYK GMTHV+
Sbjct: 1 MGARKKEAPRRGSAGLRPRKRAASIVPRVRSWPSIDEVKPL---AFLGYKVGMTHVIMID 57
Query: 208 DRPGSKINKKEIVEAVTIIETPPMVCVG--VVGYIETPHGLRALLTVW 345
DR +EI VT+IETPPMV +G V GY + G AL VW
Sbjct: 58 DREHVDTAGQEIFVPVTVIETPPMVVLGARVYGY-DPNRGRYALTEVW 104
>UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanopyrus kandleri
Length = 361
Score = 82.2 bits (194), Expect = 4e-15
Identities = 39/100 (39%), Positives = 56/100 (56%)
Frame = +1
Query: 52 PRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 231
PR GS+ F P+KR+ R +++++P ++ V + F GYKAGMTH + D P S
Sbjct: 12 PRRGSLAFSPRKRASRPVPRIRSWPDEER---VRVQGFAGYKAGMTHAIMIDDWPNSPTE 68
Query: 232 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAE 351
+EI VTI++ PPM + Y TP G R + WAE
Sbjct: 69 GEEISVPVTILDAPPMYVAAIRAYAPTPDGYRCVTEAWAE 108
>UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1;
Staphylothermus marinus F1|Rep: 50S ribosomal protein L3
- Staphylothermus marinus (strain ATCC 43588 / DSM 3639
/ F1)
Length = 395
Score = 79.0 bits (186), Expect = 4e-14
Identities = 46/125 (36%), Positives = 70/125 (56%), Gaps = 19/125 (15%)
Frame = +1
Query: 28 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFP------------------KDDPSKPVH 153
M HRK+SAPRHGS+G P+KR+ + +++++P K KPV
Sbjct: 1 MGHRKYSAPRHGSLGVRPRKRAAKIVPRIRSWPTQSWFDLLVEKLGDEAVNKGIAPKPV- 59
Query: 154 LTAFIGYKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGY-IETPHGLRA 330
L ++ YKAGM+H + DRP + + KEI VT+++ PP++ +G+ GY I HGL +
Sbjct: 60 LLGYVAYKAGMSHAIIIDDRPHTFTSGKEIAIPVTVLDAPPILILGLRGYKIHPMHGLLS 119
Query: 331 LLTVW 345
VW
Sbjct: 120 FGEVW 124
>UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5;
Thermoprotei|Rep: 50S ribosomal protein L3P - Sulfolobus
solfataricus
Length = 351
Score = 77.8 bits (183), Expect = 9e-14
Identities = 38/92 (41%), Positives = 52/92 (56%)
Frame = +1
Query: 28 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 207
M HRK ++PR GS G P+KRS + +P+ + P L F+GYK GMTHV
Sbjct: 1 MGHRKLASPRRGSAGLRPRKRSSELLPTPRTWPQINSQNP-KLLGFVGYKVGMTHVFMID 59
Query: 208 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGY 303
D P S N KEI VT++E PP++ + + Y
Sbjct: 60 DWPNSPTNGKEIYMPVTVLEVPPIIPLALRAY 91
>UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofilum
pendens Hrk 5|Rep: 50S ribosomal protein L3 -
Thermofilum pendens (strain Hrk 5)
Length = 334
Score = 76.6 bits (180), Expect = 2e-13
Identities = 40/110 (36%), Positives = 58/110 (52%)
Frame = +1
Query: 52 PRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 231
PR GS +YP+KR+R +V+ +P++ F GYK GM HV+ S
Sbjct: 7 PRRGSRAYYPRKRARSIVARVRRWPQNREG----FLGFAGYKVGMLHVIGVEMNKNSPFY 62
Query: 232 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRF 381
+E A T+IE PP+ V V Y +TP+G + L VWA+ + +D R F
Sbjct: 63 GQERFYAATVIEVPPLKVVAVRVYEKTPYGKKTLCEVWAKDLPKDLERVF 112
>UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4;
Thermococcaceae|Rep: 50S ribosomal protein L3P -
Pyrococcus furiosus
Length = 365
Score = 76.6 bits (180), Expect = 2e-13
Identities = 39/88 (44%), Positives = 54/88 (61%)
Frame = +1
Query: 40 KFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPG 219
K PR GS+GF P+KR++ +++++PK+ V + F GYKAGMTH++ D PG
Sbjct: 3 KVHRPRRGSLGFSPRKRAKSIVPRIRSWPKETE---VRMLGFAGYKAGMTHILMIDDEPG 59
Query: 220 SKINKKEIVEAVTIIETPPMVCVGVVGY 303
N KEI VTIIETPP+ G+ Y
Sbjct: 60 -LTNGKEIFMPVTIIETPPLRVFGIRAY 86
>UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanococcus jannaschii
Length = 335
Score = 74.1 bits (174), Expect = 1e-12
Identities = 41/111 (36%), Positives = 67/111 (60%), Gaps = 2/111 (1%)
Frame = +1
Query: 52 PRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 231
PR GS+ F P+KR++R +++++P++D V L AF YKAGM+H + D P S
Sbjct: 8 PRRGSLAFSPRKRAKRPVPRIRSWPEEDT---VRLQAFPVYKAGMSHAFIKEDNPKSPNA 64
Query: 232 KKEIVEAVTIIETPPM-VC-VGVVGYIETPHGLRALLTVWAEHMSEDCRRR 378
+E+ +TI+E PP+ VC + V G E + L L VWA+++ ++ R+
Sbjct: 65 GQEVFTPITILEAPPINVCAIRVYGRNERNY-LTTLTEVWADNLDKELERK 114
>UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Uncultured methanogenic archaeon RC-I
Length = 337
Score = 73.7 bits (173), Expect = 1e-12
Identities = 37/101 (36%), Positives = 58/101 (57%), Gaps = 2/101 (1%)
Frame = +1
Query: 49 APRHGSMGFYPKKRSRRHRGKVKAFPK--DDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 222
APR GS+G+ P+ R+R + K++ + + D P + F+G+KAGM+H+V DRP S
Sbjct: 6 APRRGSLGYSPRVRARSQKPKMRNWAELGDQPK----IQGFVGFKAGMSHIVMVDDRPHS 61
Query: 223 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVW 345
EI VTI+E P M G+ Y ++P+G + + W
Sbjct: 62 ATEGMEISVPVTIVEAPQMHVAGIRVYDDSPYGKKVIGEAW 102
>UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein L3
- Candidatus Nitrosopumilus maritimus SCM1
Length = 331
Score = 72.9 bits (171), Expect = 3e-12
Identities = 37/108 (34%), Positives = 61/108 (56%)
Frame = +1
Query: 28 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 207
M RK +PR GS+ + P+ R++ +++A+PK D +P + A G+KAG +V
Sbjct: 1 MGARKRHSPRRGSLAYSPRVRAKSMEARIRAWPKLDSEEP-KILAHCGFKAGCVQIVSID 59
Query: 208 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAE 351
DR K++V T++ TPP++ +G+ GY + GL A V+AE
Sbjct: 60 DREKVPNAGKQLVSLGTVLVTPPVLILGIRGYSKDHDGLHAEFDVYAE 107
>UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarchaeum
symbiosum|Rep: 50S ribosomal protein L3 - Cenarchaeum
symbiosum
Length = 328
Score = 71.7 bits (168), Expect = 6e-12
Identities = 37/113 (32%), Positives = 62/113 (54%)
Frame = +1
Query: 28 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 207
M HRKFS PR GS+ + P+ R+R +++ +P+ +P L A G+KAG +V
Sbjct: 1 MGHRKFSQPRRGSLAYSPRGRARSMEARIRGWPERQ-GEP-RLLAHAGFKAGCIQIVSID 58
Query: 208 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSED 366
DR + K++V T++ TPP+ +G+ GY + +G V+AE + +
Sbjct: 59 DREHTPNAGKQLVSLGTVLVTPPLHVLGMRGYSKGHYGRHVKFDVFAEDLPRE 111
>UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella
natans|Rep: Ribosomal protein L3 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 370
Score = 68.5 bits (160), Expect = 6e-11
Identities = 39/105 (37%), Positives = 56/105 (53%)
Frame = +1
Query: 28 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 207
MSHRKF PR GS+GF PKKRS R K + + +++ F K THV+R
Sbjct: 1 MSHRKFEHPRIGSLGFLPKKRSNRIFPSSKTYKEIIHIYYPYISQFASLKVASTHVLRIC 60
Query: 208 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTV 342
+ SK + I++ VT++E PP+ VG+ Y + L L T+
Sbjct: 61 NIVSSKSYQNPIIDEVTLMECPPIEVVGLCAYALSSGHLVKLKTI 105
>UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1;
Nanoarchaeum equitans|Rep: 50S ribosomal protein L3P -
Nanoarchaeum equitans
Length = 321
Score = 66.9 bits (156), Expect = 2e-10
Identities = 36/113 (31%), Positives = 61/113 (53%)
Frame = +1
Query: 49 APRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKI 228
APR GSMGF+P+KR+ R ++K +PK + KP+ AF YK GMTH + I
Sbjct: 8 APRRGSMGFWPRKRASRIYPRIKTWPKIEEIKPL---AFAAYKVGMTHTI-------LNI 57
Query: 229 NKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 387
N + + VT++E P ++ +G Y + L+ + +++ + + R+ K
Sbjct: 58 NGERVFTPVTVLEAPELLVIGAKAYKKENGALKEISSLYFNDLPQYVFRKIPK 110
>UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4;
Thermoplasmatales|Rep: 50S ribosomal protein L3P -
Thermoplasma volcanium
Length = 331
Score = 62.5 bits (145), Expect = 4e-09
Identities = 33/105 (31%), Positives = 57/105 (54%), Gaps = 1/105 (0%)
Frame = +1
Query: 55 RHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINK 234
R GSM +YP+ R++ +++++P + S PV + F G+K GMTHV R S
Sbjct: 8 RRGSMAYYPRVRAKSIEPRIRSWP--EISGPVKVQGFAGFKVGMTHVEMVDYRKTSVTAG 65
Query: 235 KEIVEAVTIIETPPMVCVGVVGYIETPHG-LRALLTVWAEHMSED 366
+ I VT+IE PP+ +G+ Y E G + + W +++ ++
Sbjct: 66 QPIFVPVTVIEVPPLDVIGIRLYDEDEEGNMVVVYEKWTQNLDKE 110
>UniRef50_Q78TB4 Cluster: 16 days embryo head cDNA, RIKEN
full-length enriched library, clone:C130041A08
product:weakly similar to 60S RIBOSOMAL PROTEIN L3; n=1;
Mus musculus|Rep: 16 days embryo head cDNA, RIKEN
full-length enriched library, clone:C130041A08
product:weakly similar to 60S RIBOSOMAL PROTEIN L3 - Mus
musculus (Mouse)
Length = 109
Score = 39.9 bits (89), Expect = 0.022
Identities = 20/46 (43%), Positives = 27/46 (58%)
Frame = +1
Query: 100 HRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKK 237
HR + K FPK+D K HL F+ +A MT+ V E +R G K +K
Sbjct: 8 HRIQAKDFPKEDLPKSAHLIVFLVSRAVMTYFVWEINRSGPKWTRK 53
>UniRef50_Q69NC6 Cluster: Putative uncharacterized protein
OJ1742_G01.32; n=1; Oryza sativa (japonica
cultivar-group)|Rep: Putative uncharacterized protein
OJ1742_G01.32 - Oryza sativa subsp. japonica (Rice)
Length = 100
Score = 35.5 bits (78), Expect = 0.48
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +3
Query: 234 ERDRGGCHHHRDSSDGLCRCCWIH*DPSWTTRSVD 338
E DRG CHH+ S GLCR C + P+ T V+
Sbjct: 36 EGDRGCCHHYLTGSPGLCRRCPLRAHPAATGFEVE 70
>UniRef50_Q59LS0 Cluster: Putative uncharacterized protein; n=1;
Candida albicans|Rep: Putative uncharacterized protein -
Candida albicans (Yeast)
Length = 173
Score = 35.1 bits (77), Expect = 0.64
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = -1
Query: 423 FSESLLLAFVPVFVEATSTVFRHMLRPDSQQ 331
F E LL F+PV VE++S F + PDS Q
Sbjct: 143 FGEGFLLGFIPVLVESSSDFFTQVFSPDSGQ 173
>UniRef50_Q54JS8 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 1205
Score = 34.3 bits (75), Expect = 1.1
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = +1
Query: 85 KRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTH--VVREPDRPGSKINKKEIVEAVT 258
K +++ K+K +++ K + AFI A ++ +R DR ++N I + T
Sbjct: 19 KANKKKAAKLKKLEQNEALKGRNPKAFISQAAYASNRLTIRNLDREAKRVNLPVIDRSGT 78
Query: 259 IIETPPMVCVGVVG 300
+ETPP V + VVG
Sbjct: 79 AVETPPYV-IAVVG 91
>UniRef50_UPI00015B6051 Cluster: PREDICTED: similar to
ENSANGP00000006197; n=1; Nasonia vitripennis|Rep:
PREDICTED: similar to ENSANGP00000006197 - Nasonia
vitripennis
Length = 1307
Score = 33.9 bits (74), Expect = 1.5
Identities = 20/50 (40%), Positives = 27/50 (54%)
Frame = -3
Query: 412 PSSCICTSFCRSDVDSLQTYAPPRQSTERVVHEGSQCIQQHRHKPSEESR 263
PS+ I T SD++ L P QS+ V+ +GS+ HR K SEE R
Sbjct: 840 PSASINTKKYESDIEILSN---PSQSSIEVLDDGSKSTTPHRKKSSEERR 886
>UniRef50_Q5Y974 Cluster: Structural polyprotein; n=13; Solenopsis
invicta virus 1|Rep: Structural polyprotein - Solenopsis
invicta virus 1
Length = 1137
Score = 33.1 bits (72), Expect = 2.6
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = -1
Query: 279 HRRSLDDGDSLHDLFLVDF*TGTVRFSNHVGHTGLITDKSSQMNRFARVV 130
HRR + ++ D+ LVD T++ VG GLITD +S ++ A V
Sbjct: 475 HRRDVTAARAIADMILVDERDATMQVQAEVGGQGLITDIASTVSAVAGAV 524
>UniRef50_Q5C2N1 Cluster: SJCHGC03405 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC03405 protein - Schistosoma
japonicum (Blood fluke)
Length = 321
Score = 32.7 bits (71), Expect = 3.4
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +1
Query: 46 SAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFI 168
SA H + G+Y + + RR G AF K D LTAF+
Sbjct: 225 SAQSHITSGYYQQMKYRRDDGSFSAFGKSDKHGSTWLTAFV 265
>UniRef50_Q1LXZ3 Cluster: Novel protein similar to human and mouse
F-box protein, helicase, 18; n=2; Danio rerio|Rep: Novel
protein similar to human and mouse F-box protein,
helicase, 18 - Danio rerio (Zebrafish) (Brachydanio
rerio)
Length = 992
Score = 31.9 bits (69), Expect = 5.9
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +1
Query: 220 SKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRR 378
S+ N EAV + E P + +VG +E GL ++ +W SED R++
Sbjct: 695 SRCNVTVFSEAVRLTEVNPNCKICIVGGVEN-FGLDKIMDIWVLTQSEDTRKK 746
>UniRef50_Q2H9J8 Cluster: Putative uncharacterized protein; n=1;
Chaetomium globosum|Rep: Putative uncharacterized
protein - Chaetomium globosum (Soil fungus)
Length = 674
Score = 31.9 bits (69), Expect = 5.9
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = +1
Query: 253 VTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSE 363
VT+ TPPM+ G V +E GL L VW H SE
Sbjct: 12 VTVRGTPPMLLKGTVSAVEAGTGL-TLSNVWMLHTSE 47
>UniRef50_Q2HDI7 Cluster: Putative uncharacterized protein; n=1;
Chaetomium globosum|Rep: Putative uncharacterized
protein - Chaetomium globosum (Soil fungus)
Length = 359
Score = 31.5 bits (68), Expect = 7.8
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 6/45 (13%)
Frame = +1
Query: 172 YKAGMTHVVREPDRPGSKINKKEIVEAVTIIET------PPMVCV 288
Y G+T++V P R G++++K E+ V ++E P VCV
Sbjct: 183 YSLGLTNIVSRPSRNGAELSKAEMDAGVAVLEAKVRRWRPEAVCV 227
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 462,765,235
Number of Sequences: 1657284
Number of extensions: 9573910
Number of successful extensions: 24384
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 23693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24361
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 21075479950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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