Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15o08
         (432 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)         219   6e-58
SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0)               216   6e-57
SB_25655| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.8  
SB_59107| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.8  
SB_36686| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.8  
SB_52941| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.8  
SB_54689| Best HMM Match : DUF1525 (HMM E-Value=6.3)                   27   5.0  
SB_52907| Best HMM Match : RVT_1 (HMM E-Value=2.4e-17)                 27   5.0  
SB_54674| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  
SB_11280| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  
SB_55406| Best HMM Match : DUF1534 (HMM E-Value=0.45)                  27   6.6  
SB_46154| Best HMM Match : zf-C2H2 (HMM E-Value=7.9e-27)               27   8.7  
SB_42043| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  

>SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)
          Length = 347

 Score =  219 bits (536), Expect = 6e-58
 Identities = 94/126 (74%), Positives = 111/126 (88%)
 Frame = +1

Query: 16  LSSSMSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHV 195
           L   MSHRKF APRHGS+GF P+KR +RHRGKVK+FPKDD + P HLTAFIG+KAGMTH+
Sbjct: 44  LEPKMSHRKFEAPRHGSLGFLPRKRCKRHRGKVKSFPKDDNTLPPHLTAFIGFKAGMTHI 103

Query: 196 VREPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRR 375
           +RE ++PGSK+NKKE VEAVTIIETPPM+ VGVVGYIETP G+R L T+WAEH+SE+C+R
Sbjct: 104 LREVEKPGSKLNKKEKVEAVTIIETPPMMVVGVVGYIETPRGMRVLKTIWAEHLSEECKR 163

Query: 376 RFYKNW 393
           RFYKNW
Sbjct: 164 RFYKNW 169


>SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0)
          Length = 338

 Score =  216 bits (528), Expect = 6e-57
 Identities = 92/121 (76%), Positives = 109/121 (90%)
 Frame = +1

Query: 31  SHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPD 210
           SHRKF APRHGS+GF P+KR +RHRGKVK+FPKDD + P HLTAFIG+KAGMTH++RE +
Sbjct: 1   SHRKFEAPRHGSLGFLPRKRCKRHRGKVKSFPKDDNTLPPHLTAFIGFKAGMTHILREVE 60

Query: 211 RPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 390
           +PGSK+NKKE VEAVTIIETPPM+ VGVVGYIETP G+R L T+WAEH+SE+C+RRFYKN
Sbjct: 61  KPGSKLNKKEKVEAVTIIETPPMMVVGVVGYIETPRGMRVLKTIWAEHLSEECKRRFYKN 120

Query: 391 W 393
           W
Sbjct: 121 W 121


>SB_25655| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 325

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 37  RKFSAPRHGSMGFYPKKRSRRHRGK-VKAFPKDDPSKPVH 153
           R+F  P+ G +G Y ++  R H GK +   PK +P +  +
Sbjct: 145 RRFWMPKFGHVGPYSEQVKRDHDGKIIDIIPKGNPMEDAY 184


>SB_59107| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 64

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 94  RRHRGKVKAFPKDDPSKPVHL 156
           R HR  + AFP D P+ PV L
Sbjct: 7   RAHRSSLHAFPPDGPAHPVSL 27


>SB_36686| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 675

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 268 TPPMVCVGVVGYIETPHGLRAL-LTVWAEHMSEDCRRRFY 384
           TP  +C+G  GY+ T   L+ L LTV    M E  + +++
Sbjct: 301 TPGRLCIGSYGYVATQQFLQLLRLTVLPPVMIEKAKNQYH 340


>SB_52941| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 772

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 94  RRHRGKVKAFPKDDPSKPVHL 156
           R HR  + AFP D P+ PV L
Sbjct: 15  RAHRSSLHAFPPDGPAHPVSL 35


>SB_54689| Best HMM Match : DUF1525 (HMM E-Value=6.3)
          Length = 298

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 11/45 (24%), Positives = 24/45 (53%)
 Frame = +1

Query: 76  YPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPD 210
           +P  ++ +   +V  +P  D    +H+ AF+G+K+  T  +  P+
Sbjct: 70  HPSSQNVKTSLRVPIYPPKDIQVDLHIKAFVGHKSRFTMYIPCPE 114


>SB_52907| Best HMM Match : RVT_1 (HMM E-Value=2.4e-17)
          Length = 344

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 79  PKKRSRRHRGKVKAFPKDDPSKP 147
           PK   RR+R K+   PK DP  P
Sbjct: 279 PKHNIRRNRRKLNMLPKPDPETP 301


>SB_54674| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1149

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = +1

Query: 13  RLSSSMSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFI-GYKAGMT 189
           R S  +     S+P   S     +K  ++ + +  + PKD  S P HL A +  +   + 
Sbjct: 361 RRSVELWQPSLSSPPSWSPTPSMRKSKKKEKRQSSSRPKDADSSPQHLAASVESFANYLK 420

Query: 190 HVVREPD 210
           H+VR  D
Sbjct: 421 HLVRPED 427


>SB_11280| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 607

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 19/66 (28%), Positives = 34/66 (51%)
 Frame = -1

Query: 423 FSESLLLAFVPVFVEATSTVFRHMLRPDSQQSA*SMRGLNVSNNTDTNHRRSLDDGDSLH 244
           FS+ L  AFV +F    + +     R  ++ +  + +GL+ S+NT  N+R+S    + L 
Sbjct: 316 FSKKLRQAFVRMFEAIWAKISGANDRNLNRINPDTSQGLDRSSNTVFNYRKSFATSNLLS 375

Query: 243 DLFLVD 226
           D   +D
Sbjct: 376 DEIWID 381


>SB_55406| Best HMM Match : DUF1534 (HMM E-Value=0.45)
          Length = 248

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = +1

Query: 202 EPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHG 321
           EP  P S + +  +  A TI  TPP     V    E PHG
Sbjct: 201 EPPPPYSTLERSPVTIADTIDITPPSYEEAVQSSSEEPHG 240


>SB_46154| Best HMM Match : zf-C2H2 (HMM E-Value=7.9e-27)
          Length = 799

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = +3

Query: 177 GRYDPRG*RT*PSRFKNQQERDRGGCHHHRDSSDGLCRCCWI 302
           GR      RT  +  K ++  +  G    R+  DG+C C W+
Sbjct: 504 GRLQLGSKRTDSAENKKEKRLEFNGKRSTREPDDGICSCRWL 545


>SB_42043| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 259

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 219 FKNQQERDRGGCHHHRDSSDGLCR 290
           +++++   RG   HHRD  D  CR
Sbjct: 141 YEDRERHQRGRDRHHRDRDDSGCR 164


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,565,845
Number of Sequences: 59808
Number of extensions: 313504
Number of successful extensions: 790
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 822495283
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)