Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15o08
         (432 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT011339-1|AAR96131.1|  465|Drosophila melanogaster RH62603p pro...   242   1e-64
AF016835-1|AAC26144.1|  416|Drosophila melanogaster ribosomal pr...   242   2e-64
AE014297-1263|AAF54612.2|  161|Drosophila melanogaster CG4863-PD...   242   2e-64
AE014297-1262|AAF54610.2|  416|Drosophila melanogaster CG4863-PA...   242   2e-64
AE014297-1265|AAF54609.1|  403|Drosophila melanogaster CG4863-PE...   213   6e-56
AE014297-1264|AAN13496.1|  403|Drosophila melanogaster CG4863-PB...   213   6e-56
AE014297-1266|AAF54611.1|  125|Drosophila melanogaster CG4863-PC...   206   1e-53
BT024960-1|ABE01190.1|  458|Drosophila melanogaster IP15509p pro...    27   8.2  
AE014298-1519|AAF47971.2|  458|Drosophila melanogaster CG1637-PB...    27   8.2  
AE014134-2707|AAN10938.1| 2282|Drosophila melanogaster CG31817-P...    27   8.2  

>BT011339-1|AAR96131.1|  465|Drosophila melanogaster RH62603p
           protein.
          Length = 465

 Score =  242 bits (593), Expect = 1e-64
 Identities = 105/125 (84%), Positives = 115/125 (92%)
 Frame = +1

Query: 22  SSMSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVR 201
           + MSHRKFSAPRHGSM FYPKKRS RHRGKVKAFPKDD SKPVHLT FIGYKAGMTH+VR
Sbjct: 10  TDMSHRKFSAPRHGSMAFYPKKRSARHRGKVKAFPKDDASKPVHLTCFIGYKAGMTHIVR 69

Query: 202 EPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRF 381
           E DRPGSKINKKE+VEAVT++ETPPM+ VG VGYIETP GLRAL+ VWA+H+SE+CRRRF
Sbjct: 70  EADRPGSKINKKEVVEAVTVLETPPMIVVGAVGYIETPFGLRALVNVWAQHLSEECRRRF 129

Query: 382 YKNWY 396
           YKNWY
Sbjct: 130 YKNWY 134


>AF016835-1|AAC26144.1|  416|Drosophila melanogaster ribosomal
           protein L3 protein.
          Length = 416

 Score =  242 bits (592), Expect = 2e-64
 Identities = 105/123 (85%), Positives = 114/123 (92%)
 Frame = +1

Query: 28  MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 207
           MSHRKFSAPRHGSM FYPKKRS RHRGKVKAFPKDD SKPVHLT FIGYKAGMTH+VRE 
Sbjct: 1   MSHRKFSAPRHGSMAFYPKKRSARHRGKVKAFPKDDASKPVHLTCFIGYKAGMTHIVREA 60

Query: 208 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 387
           DRPGSKINKKE+VEAVT++ETPPM+ VG VGYIETP GLRAL+ VWA+H+SE+CRRRFYK
Sbjct: 61  DRPGSKINKKEVVEAVTVLETPPMIVVGAVGYIETPFGLRALVNVWAQHLSEECRRRFYK 120

Query: 388 NWY 396
           NWY
Sbjct: 121 NWY 123


>AE014297-1263|AAF54612.2|  161|Drosophila melanogaster CG4863-PD,
           isoform D protein.
          Length = 161

 Score =  242 bits (592), Expect = 2e-64
 Identities = 105/123 (85%), Positives = 114/123 (92%)
 Frame = +1

Query: 28  MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 207
           MSHRKFSAPRHGSM FYPKKRS RHRGKVKAFPKDD SKPVHLT FIGYKAGMTH+VRE 
Sbjct: 1   MSHRKFSAPRHGSMAFYPKKRSARHRGKVKAFPKDDASKPVHLTCFIGYKAGMTHIVREA 60

Query: 208 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 387
           DRPGSKINKKE+VEAVT++ETPPM+ VG VGYIETP GLRAL+ VWA+H+SE+CRRRFYK
Sbjct: 61  DRPGSKINKKEVVEAVTVLETPPMIVVGAVGYIETPFGLRALVNVWAQHLSEECRRRFYK 120

Query: 388 NWY 396
           NWY
Sbjct: 121 NWY 123


>AE014297-1262|AAF54610.2|  416|Drosophila melanogaster CG4863-PA,
           isoform A protein.
          Length = 416

 Score =  242 bits (592), Expect = 2e-64
 Identities = 105/123 (85%), Positives = 114/123 (92%)
 Frame = +1

Query: 28  MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 207
           MSHRKFSAPRHGSM FYPKKRS RHRGKVKAFPKDD SKPVHLT FIGYKAGMTH+VRE 
Sbjct: 1   MSHRKFSAPRHGSMAFYPKKRSARHRGKVKAFPKDDASKPVHLTCFIGYKAGMTHIVREA 60

Query: 208 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 387
           DRPGSKINKKE+VEAVT++ETPPM+ VG VGYIETP GLRAL+ VWA+H+SE+CRRRFYK
Sbjct: 61  DRPGSKINKKEVVEAVTVLETPPMIVVGAVGYIETPFGLRALVNVWAQHLSEECRRRFYK 120

Query: 388 NWY 396
           NWY
Sbjct: 121 NWY 123


>AE014297-1265|AAF54609.1|  403|Drosophila melanogaster CG4863-PE,
           isoform E protein.
          Length = 403

 Score =  213 bits (521), Expect = 6e-56
 Identities = 92/110 (83%), Positives = 101/110 (91%)
 Frame = +1

Query: 67  MGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIV 246
           M FYPKKRS RHRGKVKAFPKDD SKPVHLT FIGYKAGMTH+VRE DRPGSKINKKE+V
Sbjct: 1   MAFYPKKRSARHRGKVKAFPKDDASKPVHLTCFIGYKAGMTHIVREADRPGSKINKKEVV 60

Query: 247 EAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWY 396
           EAVT++ETPPM+ VG VGYIETP GLRAL+ VWA+H+SE+CRRRFYKNWY
Sbjct: 61  EAVTVLETPPMIVVGAVGYIETPFGLRALVNVWAQHLSEECRRRFYKNWY 110


>AE014297-1264|AAN13496.1|  403|Drosophila melanogaster CG4863-PB,
           isoform B protein.
          Length = 403

 Score =  213 bits (521), Expect = 6e-56
 Identities = 92/110 (83%), Positives = 101/110 (91%)
 Frame = +1

Query: 67  MGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIV 246
           M FYPKKRS RHRGKVKAFPKDD SKPVHLT FIGYKAGMTH+VRE DRPGSKINKKE+V
Sbjct: 1   MAFYPKKRSARHRGKVKAFPKDDASKPVHLTCFIGYKAGMTHIVREADRPGSKINKKEVV 60

Query: 247 EAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWY 396
           EAVT++ETPPM+ VG VGYIETP GLRAL+ VWA+H+SE+CRRRFYKNWY
Sbjct: 61  EAVTVLETPPMIVVGAVGYIETPFGLRALVNVWAQHLSEECRRRFYKNWY 110


>AE014297-1266|AAF54611.1|  125|Drosophila melanogaster CG4863-PC,
           isoform C protein.
          Length = 125

 Score =  206 bits (503), Expect = 1e-53
 Identities = 90/108 (83%), Positives = 99/108 (91%)
 Frame = +1

Query: 67  MGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIV 246
           M FYPKKRS RHRGKVKAFPKDD SKPVHLT FIGYKAGMTH+VRE DRPGSKINKKE+V
Sbjct: 1   MAFYPKKRSARHRGKVKAFPKDDASKPVHLTCFIGYKAGMTHIVREADRPGSKINKKEVV 60

Query: 247 EAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 390
           EAVT++ETPPM+ VG VGYIETP GLRAL+ VWA+H+SE+CRRRFYKN
Sbjct: 61  EAVTVLETPPMIVVGAVGYIETPFGLRALVNVWAQHLSEECRRRFYKN 108


>BT024960-1|ABE01190.1|  458|Drosophila melanogaster IP15509p
           protein.
          Length = 458

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = +1

Query: 49  APRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHL-TAFIGYKAG 183
           A  H     +P    +   G +K  P +DPS PVH+ T   G K G
Sbjct: 352 AHEHSYERLWPIYDYKVRNGTLKDSPYNDPSAPVHIVTGSAGCKEG 397


>AE014298-1519|AAF47971.2|  458|Drosophila melanogaster CG1637-PB,
           isoform B protein.
          Length = 458

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = +1

Query: 49  APRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHL-TAFIGYKAG 183
           A  H     +P    +   G +K  P +DPS PVH+ T   G K G
Sbjct: 352 AHEHSYERLWPIYDYKVRNGTLKDSPYNDPSAPVHIVTGSAGCKEG 397


>AE014134-2707|AAN10938.1| 2282|Drosophila melanogaster CG31817-PA
            protein.
          Length = 2282

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +1

Query: 52   PRHGSMGFYPKKRSRRHRGKVKAFPKDDP 138
            PR G    YPK  S RH  K    P+ DP
Sbjct: 1207 PRSGENPNYPKAHSARHYSKENYQPECDP 1235


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,054,331
Number of Sequences: 53049
Number of extensions: 459336
Number of successful extensions: 1169
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1169
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1355285490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)