Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15o08
         (432 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69337-1|CAA93269.1|  401|Caenorhabditis elegans ribosomal prote...   221   2e-58
Z69336-1|CAA93268.1|  401|Caenorhabditis elegans ribosomal prote...   221   2e-58
Z66495-14|CAH04729.1|  353|Caenorhabditis elegans Hypothetical p...   221   2e-58
Z66495-12|CAA91277.1|  401|Caenorhabditis elegans Hypothetical p...   221   2e-58
Z49936-7|CAH10799.1|  353|Caenorhabditis elegans Hypothetical pr...   221   2e-58
Z49936-6|CAA90183.1|  401|Caenorhabditis elegans Hypothetical pr...   221   2e-58
Z66495-15|CAH04728.1|  303|Caenorhabditis elegans Hypothetical p...    64   5e-11
Z49936-8|CAH10798.1|  303|Caenorhabditis elegans Hypothetical pr...    64   5e-11
AF003146-5|AAB54199.1|  299|Caenorhabditis elegans Hypothetical ...    30   0.62 
AF043702-7|AAK21492.4| 1655|Caenorhabditis elegans Intestinal ne...    29   1.4  
Z68748-4|CAD27622.1|  617|Caenorhabditis elegans Hypothetical pr...    27   5.8  
Z68748-3|CAA92953.2|  615|Caenorhabditis elegans Hypothetical pr...    27   5.8  
AC024761-6|AAF59467.3|  599|Caenorhabditis elegans Hypothetical ...    27   7.7  
AC024761-5|AAU05550.1|  601|Caenorhabditis elegans Hypothetical ...    27   7.7  

>Z69337-1|CAA93269.1|  401|Caenorhabditis elegans ribosomal protein
           L3 protein.
          Length = 401

 Score =  221 bits (540), Expect = 2e-58
 Identities = 93/122 (76%), Positives = 109/122 (89%)
 Frame = +1

Query: 28  MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 207
           MSHRKFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ 
Sbjct: 1   MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60

Query: 208 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 387
           D+PGSK+NKKE+VEAVTI+ETPPMV  GV GY++TP G RAL T+WAEH+SE+ RRRFY 
Sbjct: 61  DKPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYS 120

Query: 388 NW 393
           NW
Sbjct: 121 NW 122


>Z69336-1|CAA93268.1|  401|Caenorhabditis elegans ribosomal protein
           L3 protein.
          Length = 401

 Score =  221 bits (540), Expect = 2e-58
 Identities = 93/122 (76%), Positives = 109/122 (89%)
 Frame = +1

Query: 28  MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 207
           MSHRKFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ 
Sbjct: 1   MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60

Query: 208 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 387
           D+PGSK+NKKE+VEAVTI+ETPPMV  GV GY++TP G RAL T+WAEH+SE+ RRRFY 
Sbjct: 61  DKPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYS 120

Query: 388 NW 393
           NW
Sbjct: 121 NW 122


>Z66495-14|CAH04729.1|  353|Caenorhabditis elegans Hypothetical
           protein F13B10.2c protein.
          Length = 353

 Score =  221 bits (540), Expect = 2e-58
 Identities = 93/122 (76%), Positives = 109/122 (89%)
 Frame = +1

Query: 28  MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 207
           MSHRKFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ 
Sbjct: 1   MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60

Query: 208 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 387
           D+PGSK+NKKE+VEAVTI+ETPPMV  GV GY++TP G RAL T+WAEH+SE+ RRRFY 
Sbjct: 61  DKPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYS 120

Query: 388 NW 393
           NW
Sbjct: 121 NW 122


>Z66495-12|CAA91277.1|  401|Caenorhabditis elegans Hypothetical
           protein F13B10.2a protein.
          Length = 401

 Score =  221 bits (540), Expect = 2e-58
 Identities = 93/122 (76%), Positives = 109/122 (89%)
 Frame = +1

Query: 28  MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 207
           MSHRKFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ 
Sbjct: 1   MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60

Query: 208 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 387
           D+PGSK+NKKE+VEAVTI+ETPPMV  GV GY++TP G RAL T+WAEH+SE+ RRRFY 
Sbjct: 61  DKPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYS 120

Query: 388 NW 393
           NW
Sbjct: 121 NW 122


>Z49936-7|CAH10799.1|  353|Caenorhabditis elegans Hypothetical
           protein F13B10.2c protein.
          Length = 353

 Score =  221 bits (540), Expect = 2e-58
 Identities = 93/122 (76%), Positives = 109/122 (89%)
 Frame = +1

Query: 28  MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 207
           MSHRKFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ 
Sbjct: 1   MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60

Query: 208 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 387
           D+PGSK+NKKE+VEAVTI+ETPPMV  GV GY++TP G RAL T+WAEH+SE+ RRRFY 
Sbjct: 61  DKPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYS 120

Query: 388 NW 393
           NW
Sbjct: 121 NW 122


>Z49936-6|CAA90183.1|  401|Caenorhabditis elegans Hypothetical
           protein F13B10.2a protein.
          Length = 401

 Score =  221 bits (540), Expect = 2e-58
 Identities = 93/122 (76%), Positives = 109/122 (89%)
 Frame = +1

Query: 28  MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 207
           MSHRKFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ 
Sbjct: 1   MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60

Query: 208 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 387
           D+PGSK+NKKE+VEAVTI+ETPPMV  GV GY++TP G RAL T+WAEH+SE+ RRRFY 
Sbjct: 61  DKPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYS 120

Query: 388 NW 393
           NW
Sbjct: 121 NW 122


>Z66495-15|CAH04728.1|  303|Caenorhabditis elegans Hypothetical
           protein F13B10.2d protein.
          Length = 303

 Score = 63.7 bits (148), Expect = 5e-11
 Identities = 27/34 (79%), Positives = 30/34 (88%)
 Frame = +1

Query: 28  MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPK 129
           MSHRKFSAPRHG MGF PKKRSR +RG++KAF K
Sbjct: 1   MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFTK 34


>Z49936-8|CAH10798.1|  303|Caenorhabditis elegans Hypothetical
           protein F13B10.2d protein.
          Length = 303

 Score = 63.7 bits (148), Expect = 5e-11
 Identities = 27/34 (79%), Positives = 30/34 (88%)
 Frame = +1

Query: 28  MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPK 129
           MSHRKFSAPRHG MGF PKKRSR +RG++KAF K
Sbjct: 1   MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFTK 34


>AF003146-5|AAB54199.1|  299|Caenorhabditis elegans Hypothetical
           protein F56F4.2 protein.
          Length = 299

 Score = 30.3 bits (65), Expect = 0.62
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +1

Query: 268 TPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWY 396
           T P     + GY++   G+R    VW E  S+   +   KNW+
Sbjct: 201 TDPNGYFDIAGYVDQSSGVRGRFWVWHECFSQKYHKDPCKNWF 243


>AF043702-7|AAK21492.4| 1655|Caenorhabditis elegans Intestinal
            neurexin-like protein 1 protein.
          Length = 1655

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = +3

Query: 249  GCHHHRDSSDGLCRCCWIH*DPSWTTRSVDCLGGAYV*RLSTSLLQKLVQMQEEGF 416
            GC      + G C   W + DPS  T + DC   +Y    ++  L + V M+  GF
Sbjct: 1160 GCSSITCLNGGHCSVAWANTDPSAATTTCDCSRTSYT--GASCSLDEGVHMERSGF 1213


>Z68748-4|CAD27622.1|  617|Caenorhabditis elegans Hypothetical
           protein F13H10.3b protein.
          Length = 617

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = -1

Query: 393 PVFVEATSTVFRHMLR--PDSQQSA 325
           P F E T +VFRH  R  PD + SA
Sbjct: 3   PFFAEFTESVFRHFRRNEPDEENSA 27


>Z68748-3|CAA92953.2|  615|Caenorhabditis elegans Hypothetical
           protein F13H10.3a protein.
          Length = 615

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = -1

Query: 393 PVFVEATSTVFRHMLR--PDSQQSA 325
           P F E T +VFRH  R  PD + SA
Sbjct: 3   PFFAEFTESVFRHFRRNEPDEENSA 27


>AC024761-6|AAF59467.3|  599|Caenorhabditis elegans Hypothetical
           protein Y38C1AA.5a protein.
          Length = 599

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = +1

Query: 109 KVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP--DRPGSKINKKEIVEAVTIIETP 273
           KV A   +DPS      + +      T+  + P  D P S  N KEI E  TI+ +P
Sbjct: 310 KVDASKWNDPSAYATAPSTVDSTTPKTYREQPPTADAPFSSDNSKEIHETSTIVASP 366


>AC024761-5|AAU05550.1|  601|Caenorhabditis elegans Hypothetical
           protein Y38C1AA.5b protein.
          Length = 601

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = +1

Query: 109 KVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP--DRPGSKINKKEIVEAVTIIETP 273
           KV A   +DPS      + +      T+  + P  D P S  N KEI E  TI+ +P
Sbjct: 312 KVDASKWNDPSAYATAPSTVDSTTPKTYREQPPTADAPFSSDNSKEIHETSTIVASP 368


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,587,732
Number of Sequences: 27780
Number of extensions: 226079
Number of successful extensions: 546
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)