Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15o06
         (379 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces...   123   8e-30
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    26   2.3  
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...    25   3.9  
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    25   5.2  
SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces po...    25   5.2  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    24   6.9  
SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr 1...    24   9.1  

>SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 249

 Score =  123 bits (297), Expect = 8e-30
 Identities = 59/95 (62%), Positives = 73/95 (76%)
 Frame = +3

Query: 3   ESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVK 182
           E+GA+GCEVV+SGKLR  RAKSMKF DG MIHSG P  D++++ATRHVLLRQGVLG+KVK
Sbjct: 130 EAGAKGCEVVISGKLRAARAKSMKFADGFMIHSGQPAVDFIDSATRHVLLRQGVLGVKVK 189

Query: 183 IMLPWDRQGKNGPKKPQPDHILVTEPKDEPVPLEP 287
           IMLP   + K   KK  PD ++V +PK+E    +P
Sbjct: 190 IMLP---EPKTRQKKSLPDIVVVLDPKEEEPITKP 221


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = +2

Query: 53   STCQINEVCR-WTHDPLWRPLQ*LRQHCYQT 142
            + C   + CR W   P W+ +  + Q+C+ T
Sbjct: 1420 TVCNRKKACRLWNFKPHWQVITRIPQYCHDT 1450


>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 51  GQRAKSMKFVDGLMIHSGDPCNDYVN 128
           G+R K + F D    H G P  DY++
Sbjct: 218 GRREKLLVFGDDYDSHDGTPIRDYIH 243


>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
           Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 24.6 bits (51), Expect = 5.2
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +3

Query: 108 PCNDYVNTATRHVL 149
           PC+DYV  A R VL
Sbjct: 679 PCSDYVEAAVRQVL 692


>SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 508

 Score = 24.6 bits (51), Expect = 5.2
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +2

Query: 215 RPEEATTRPHP 247
           +PEE T+RPHP
Sbjct: 404 KPEEITSRPHP 414


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 24.2 bits (50), Expect = 6.9
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 30   VVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRH 143
            ++  +L+     S K  D ++I  GD  ND + T+ RH
Sbjct: 1882 LLDSELKDGNYISAKGKDVIVIGGGDTGNDCLGTSVRH 1919


>SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 249 VTEPKDEPVPLEPTSEVRS 305
           ++EP D  +P EP++ VRS
Sbjct: 1   MSEPYDPYIPAEPSAAVRS 19


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,441,137
Number of Sequences: 5004
Number of extensions: 26611
Number of successful extensions: 50
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)