Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15o06
         (379 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X72921-1|CAA51425.1|  246|Drosophila melanogaster ribosomal prot...   168   2e-42
L13690-1|AAA28875.1|  246|Drosophila melanogaster ribosomal prot...   168   2e-42
BT024258-1|ABC86320.1|  253|Drosophila melanogaster IP15838p pro...   168   2e-42
AY118971-1|AAM50831.1|  246|Drosophila melanogaster LD47488p pro...   168   2e-42
AE014297-3319|AAF56129.1|  246|Drosophila melanogaster CG6779-PA...   168   2e-42
M77166-1|AAA28528.1|  873|Drosophila melanogaster fasciclin II p...    28   3.5  
M77165-1|AAA28527.1|  811|Drosophila melanogaster fasciclin II p...    28   3.5  
BT014661-1|AAT27285.1|  773|Drosophila melanogaster GH15080p pro...    28   3.5  
AL033125-2|CAA21826.1|  850|Drosophila melanogaster EG:EG0007.3,...    28   3.5  
AL033125-1|CAA21825.1|  788|Drosophila melanogaster EG:EG0007.3,...    28   3.5  
AE014298-607|AAN09119.1|  811|Drosophila melanogaster CG3665-PC,...    28   3.5  
AE014298-606|AAN09118.1|  773|Drosophila melanogaster CG3665-PB,...    28   3.5  
AE014298-605|AAF45925.2|  873|Drosophila melanogaster CG3665-PA,...    28   3.5  
AY089510-1|AAL90248.1|  697|Drosophila melanogaster GH20325p pro...    28   4.6  
AE013599-1631|AAF58428.1|  697|Drosophila melanogaster CG13325-P...    28   4.6  
AE014296-791|AAF47860.1|  180|Drosophila melanogaster CG1295-PA ...    27   8.0  

>X72921-1|CAA51425.1|  246|Drosophila melanogaster ribosomal protein
           S3 protein.
          Length = 246

 Score =  168 bits (408), Expect = 2e-42
 Identities = 77/100 (77%), Positives = 87/100 (87%)
 Frame = +3

Query: 3   ESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVK 182
           ESGA+GCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYV TATRHVLLRQGVLGIKVK
Sbjct: 130 ESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVETATRHVLLRQGVLGIKVK 189

Query: 183 IMLPWDRQGKNGPKKPQPDHILVTEPKDEPVPLEPTSEVR 302
           +MLP+D + K GPKKP PD++ V EPK+E +   P +E +
Sbjct: 190 VMLPYDPKNKIGPKKPLPDNVSVVEPKEEKIYETPETEYK 229


>L13690-1|AAA28875.1|  246|Drosophila melanogaster ribosomal protein
           S3/AP endonucleaseDNA repair protein protein.
          Length = 246

 Score =  168 bits (408), Expect = 2e-42
 Identities = 77/100 (77%), Positives = 87/100 (87%)
 Frame = +3

Query: 3   ESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVK 182
           ESGA+GCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYV TATRHVLLRQGVLGIKVK
Sbjct: 130 ESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVETATRHVLLRQGVLGIKVK 189

Query: 183 IMLPWDRQGKNGPKKPQPDHILVTEPKDEPVPLEPTSEVR 302
           +MLP+D + K GPKKP PD++ V EPK+E +   P +E +
Sbjct: 190 VMLPYDPKNKIGPKKPLPDNVSVVEPKEEKIYETPETEYK 229


>BT024258-1|ABC86320.1|  253|Drosophila melanogaster IP15838p
           protein.
          Length = 253

 Score =  168 bits (408), Expect = 2e-42
 Identities = 77/100 (77%), Positives = 87/100 (87%)
 Frame = +3

Query: 3   ESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVK 182
           ESGA+GCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYV TATRHVLLRQGVLGIKVK
Sbjct: 137 ESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVETATRHVLLRQGVLGIKVK 196

Query: 183 IMLPWDRQGKNGPKKPQPDHILVTEPKDEPVPLEPTSEVR 302
           +MLP+D + K GPKKP PD++ V EPK+E +   P +E +
Sbjct: 197 VMLPYDPKNKIGPKKPLPDNVSVVEPKEEKIYETPETEYK 236


>AY118971-1|AAM50831.1|  246|Drosophila melanogaster LD47488p
           protein.
          Length = 246

 Score =  168 bits (408), Expect = 2e-42
 Identities = 77/100 (77%), Positives = 87/100 (87%)
 Frame = +3

Query: 3   ESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVK 182
           ESGA+GCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYV TATRHVLLRQGVLGIKVK
Sbjct: 130 ESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVETATRHVLLRQGVLGIKVK 189

Query: 183 IMLPWDRQGKNGPKKPQPDHILVTEPKDEPVPLEPTSEVR 302
           +MLP+D + K GPKKP PD++ V EPK+E +   P +E +
Sbjct: 190 VMLPYDPKNKIGPKKPLPDNVSVVEPKEEKIYETPETEYK 229


>AE014297-3319|AAF56129.1|  246|Drosophila melanogaster CG6779-PA
           protein.
          Length = 246

 Score =  168 bits (408), Expect = 2e-42
 Identities = 77/100 (77%), Positives = 87/100 (87%)
 Frame = +3

Query: 3   ESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVK 182
           ESGA+GCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYV TATRHVLLRQGVLGIKVK
Sbjct: 130 ESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVETATRHVLLRQGVLGIKVK 189

Query: 183 IMLPWDRQGKNGPKKPQPDHILVTEPKDEPVPLEPTSEVR 302
           +MLP+D + K GPKKP PD++ V EPK+E +   P +E +
Sbjct: 190 VMLPYDPKNKIGPKKPLPDNVSVVEPKEEKIYETPETEYK 229


>M77166-1|AAA28528.1|  873|Drosophila melanogaster fasciclin II
           protein.
          Length = 873

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +3

Query: 210 KNGPKKPQPDHILVTEPKDEPVPLEPTSE 296
           ++ P++P+P H  V   K+EPV + P S+
Sbjct: 622 RSAPEEPKPLHNPVQHDKEEPVVVSPYSD 650


>M77165-1|AAA28527.1|  811|Drosophila melanogaster fasciclin II
           protein.
          Length = 811

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +3

Query: 210 KNGPKKPQPDHILVTEPKDEPVPLEPTSE 296
           ++ P++P+P H  V   K+EPV + P S+
Sbjct: 622 RSAPEEPKPLHNPVQHDKEEPVVVSPYSD 650


>BT014661-1|AAT27285.1|  773|Drosophila melanogaster GH15080p
           protein.
          Length = 773

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +3

Query: 210 KNGPKKPQPDHILVTEPKDEPVPLEPTSE 296
           ++ P++P+P H  V   K+EPV + P S+
Sbjct: 622 RSAPEEPKPLHNPVQHDKEEPVVVSPYSD 650


>AL033125-2|CAA21826.1|  850|Drosophila melanogaster
           EG:EG0007.3,FBgn0000635;Fas2 protein.
          Length = 850

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +3

Query: 210 KNGPKKPQPDHILVTEPKDEPVPLEPTSE 296
           ++ P++P+P H  V   K+EPV + P S+
Sbjct: 599 RSAPEEPKPLHNPVQHDKEEPVVVSPYSD 627


>AL033125-1|CAA21825.1|  788|Drosophila melanogaster
           EG:EG0007.3,FBgn0000635;Fas2 protein.
          Length = 788

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +3

Query: 210 KNGPKKPQPDHILVTEPKDEPVPLEPTSE 296
           ++ P++P+P H  V   K+EPV + P S+
Sbjct: 599 RSAPEEPKPLHNPVQHDKEEPVVVSPYSD 627


>AE014298-607|AAN09119.1|  811|Drosophila melanogaster CG3665-PC,
           isoform C protein.
          Length = 811

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +3

Query: 210 KNGPKKPQPDHILVTEPKDEPVPLEPTSE 296
           ++ P++P+P H  V   K+EPV + P S+
Sbjct: 622 RSAPEEPKPLHNPVQHDKEEPVVVSPYSD 650


>AE014298-606|AAN09118.1|  773|Drosophila melanogaster CG3665-PB,
           isoform B protein.
          Length = 773

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +3

Query: 210 KNGPKKPQPDHILVTEPKDEPVPLEPTSE 296
           ++ P++P+P H  V   K+EPV + P S+
Sbjct: 622 RSAPEEPKPLHNPVQHDKEEPVVVSPYSD 650


>AE014298-605|AAF45925.2|  873|Drosophila melanogaster CG3665-PA,
           isoform A protein.
          Length = 873

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +3

Query: 210 KNGPKKPQPDHILVTEPKDEPVPLEPTSE 296
           ++ P++P+P H  V   K+EPV + P S+
Sbjct: 622 RSAPEEPKPLHNPVQHDKEEPVVVSPYSD 650


>AY089510-1|AAL90248.1|  697|Drosophila melanogaster GH20325p
           protein.
          Length = 697

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = +3

Query: 141 HVLLRQGVLGIKVKIMLPWDRQGKNGPKKPQPDHILVTEPKDEPVPLEPTS 293
           H+L+   + G+ +  + P   +GK  P + Q  HI   EP+D    LEPT+
Sbjct: 647 HLLIEAPIGGLDI-FLRP---KGKISPTEKQTSHIDDKEPRDPENLLEPTT 693


>AE013599-1631|AAF58428.1|  697|Drosophila melanogaster CG13325-PA
           protein.
          Length = 697

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = +3

Query: 141 HVLLRQGVLGIKVKIMLPWDRQGKNGPKKPQPDHILVTEPKDEPVPLEPTS 293
           H+L+   + G+ +  + P   +GK  P + Q  HI   EP+D    LEPT+
Sbjct: 647 HLLIEAPIGGLDI-FLRP---KGKISPTEKQTSHIDDKEPRDPENLLEPTT 693


>AE014296-791|AAF47860.1|  180|Drosophila melanogaster CG1295-PA
           protein.
          Length = 180

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = +2

Query: 98  LWRPLQ*LRQHCYQTC--ASQTRSTRNQGQN 184
           LW P+      CY+ C  AS+ R+T NQ +N
Sbjct: 93  LWEPINRFWAECYEACKAASKQRAT-NQAEN 122


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,570,852
Number of Sequences: 53049
Number of extensions: 339387
Number of successful extensions: 1195
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1192
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 1003372560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)