Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15o06
         (379 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   2.8  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    20   8.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   8.4  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +2

Query: 173  QGQNHVAVGPARQERPEEATTRPHPGNRAQGRARAPRADQ 292
            Q Q  +   P+  +R     T P P N  QG+A+A    Q
Sbjct: 980  QSQQPIMTDPSPFKRGRY--TPPQPANAQQGQAQAQAKPQ 1017


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
            protein.
          Length = 1010

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +3

Query: 81   DGLMIHSGDPCND 119
            D L+ H G P ND
Sbjct: 995  DVLVFHQGQPTND 1007


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +2

Query: 233  TRPHPGNRAQGRARAP 280
            T PHPGN   G    P
Sbjct: 1747 TFPHPGNGHSGTMGPP 1762


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,347
Number of Sequences: 438
Number of extensions: 1838
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9176370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)