Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc15o04
(505 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein L12.1/L12A|... 197 7e-52
SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein L12... 197 7e-52
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo... 25 4.9
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c... 25 4.9
SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces... 25 4.9
SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharom... 25 6.5
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo... 25 6.5
SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe... 25 8.5
>SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein
L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
Length = 165
Score = 197 bits (481), Expect = 7e-52
Identities = 86/128 (67%), Positives = 113/128 (88%)
Frame = +1
Query: 121 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITV 300
MPPKFDPNE+K + +R VGGEV S+LAPKIGPLGLSPKKVG+DIAKAT DWKGL++TV
Sbjct: 1 MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATKDWKGLRVTV 60
Query: 301 QLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVVGIAKIMRNRS 480
+LT+QNRQA ++VVPSA+AL+I+ALKEP RDRKK KN+ H+GN+SL++++ +A+ MR +S
Sbjct: 61 KLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEIIEVARTMRFKS 120
Query: 481 MARYLSGS 504
+A+ LSG+
Sbjct: 121 LAKELSGT 128
>SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein
L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
Length = 165
Score = 197 bits (481), Expect = 7e-52
Identities = 86/128 (67%), Positives = 113/128 (88%)
Frame = +1
Query: 121 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITV 300
MPPKFDPNE+K + +R VGGEV S+LAPKIGPLGLSPKKVG+DIAKAT DWKGL++TV
Sbjct: 1 MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATKDWKGLRVTV 60
Query: 301 QLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVVGIAKIMRNRS 480
+LT+QNRQA ++VVPSA+AL+I+ALKEP RDRKK KN+ H+GN+SL++++ +A+ MR +S
Sbjct: 61 KLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEIIEVARTMRFKS 120
Query: 481 MARYLSGS 504
+A+ LSG+
Sbjct: 121 LAKELSGT 128
>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
Aah4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 774
Score = 25.4 bits (53), Expect = 4.9
Identities = 8/24 (33%), Positives = 12/24 (50%)
Frame = +3
Query: 423 RQHLP*RCSRHCEDHEKQINGPVP 494
+ H+ +C HC H + PVP
Sbjct: 162 KTHIDHKCKEHCSCHHDKFPRPVP 185
Score = 24.6 bits (51), Expect = 8.5
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = +3
Query: 417 TQRQHLP*RCSRHCEDHEKQINGPVP 494
T+ H P + HC H + + PVP
Sbjct: 328 TKPDHKPWKHEEHCSCHHDKFSRPVP 353
>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 339
Score = 25.4 bits (53), Expect = 4.9
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -2
Query: 399 FTVTGRLLKGSDDKGCCR 346
F VTG +L S D GC R
Sbjct: 297 FNVTGTILSSSGDDGCVR 314
>SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 172
Score = 25.4 bits (53), Expect = 4.9
Identities = 15/63 (23%), Positives = 28/63 (44%)
Frame = +1
Query: 289 KITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVVGIAKIM 468
K + Q ++ N + V ++ L LKE +D++K ++ S + A+
Sbjct: 23 KPSQQASIPNVELSSTVTSNSQVLNNDPLKETKKDKRKDRHFNWQQKFSNPKISASARKR 82
Query: 469 RNR 477
RNR
Sbjct: 83 RNR 85
>SPBC725.14 |arg6||acetylglutamate synthase Arg6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 500
Score = 25.0 bits (52), Expect = 6.5
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -3
Query: 200 DDVAPTSPPTHRKFTILI 147
D++A T PP HRK IL+
Sbjct: 249 DELAKTLPPYHRKNLILV 266
>SPCC126.09 |||vacuolar membrane zinc transporter
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 418
Score = 25.0 bits (52), Expect = 6.5
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -3
Query: 497 ERYRAIDLFLMIFAMPTTSSREMLPLCLIFFCFLRSRG 384
E Y LFL+ F + TT +L L + FC + G
Sbjct: 15 EFYDCCGLFLLTFFLLTTCQLRILSLSINAFCVFGASG 52
>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 24.6 bits (51), Expect = 8.5
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +1
Query: 220 PLGLS--PKKVGDDIAKATSDWKGLKITVQLTVQNRQAQIAV 339
PLG+ PKK+ +++A+ G+K+T +VQ+ I V
Sbjct: 381 PLGVHMLPKKLDEEVARLHLGKLGVKLTTLTSVQSDYLGIPV 422
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,104,729
Number of Sequences: 5004
Number of extensions: 41303
Number of successful extensions: 110
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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