Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc15o04
(505 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1026 + 30214437-30214937 198 2e-51
02_05_0416 + 28791512-28792012 195 2e-50
06_01_0796 - 5932794-5934212,5934955-5935013,5936324-5936414 29 1.6
03_06_0776 - 36176390-36177589 29 2.1
11_01_0669 - 5454116-5454153,5454569-5454770,5454865-5455029,545... 28 4.9
07_03_0313 + 16620817-16621515 27 6.5
04_04_1551 - 34348110-34348225,34348468-34348606,34348658-343488... 27 6.5
07_01_1116 + 10308029-10308111,10308575-10308737,10308996-103090... 27 8.6
04_04_1574 - 34536744-34537136,34541247-34541405,34541497-345424... 27 8.6
>04_04_1026 + 30214437-30214937
Length = 166
Score = 198 bits (484), Expect = 2e-51
Identities = 93/129 (72%), Positives = 115/129 (89%), Gaps = 1/129 (0%)
Frame = +1
Query: 121 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKIT 297
MPPK DP ++ V +R GGEVGA SSLAPKIGPLGLSPKK+G+DIAK T+ DWKGL++T
Sbjct: 1 MPPKLDPTQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60
Query: 298 VQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVVGIAKIMRNR 477
V+LTVQNRQA+++VVPSAAAL+I+ALKEP RDRKK KNIKH+GNISL+DV+ IA+IMRNR
Sbjct: 61 VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHSGNISLDDVIEIARIMRNR 120
Query: 478 SMARYLSGS 504
SMA+ ++G+
Sbjct: 121 SMAKEMAGT 129
>02_05_0416 + 28791512-28792012
Length = 166
Score = 195 bits (475), Expect = 2e-50
Identities = 91/129 (70%), Positives = 114/129 (88%), Gaps = 1/129 (0%)
Frame = +1
Query: 121 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKIT 297
MPPK DP ++ V +R GGEVGA SSLAPKIGPLGLSPKK+G+DIAK T+ DWKGL++T
Sbjct: 1 MPPKLDPTQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60
Query: 298 VQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVVGIAKIMRNR 477
V+LTVQNRQA+++VVPSAAAL+I+ALKEP RDRKK KNIKH+GNISL+DV+ IA++MR R
Sbjct: 61 VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHSGNISLDDVIEIARVMRPR 120
Query: 478 SMARYLSGS 504
SMA+ ++G+
Sbjct: 121 SMAKEMAGT 129
>06_01_0796 - 5932794-5934212,5934955-5935013,5936324-5936414
Length = 522
Score = 29.5 bits (63), Expect = 1.6
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +1
Query: 277 WKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQ 405
W + V V + + V+P+A A +IRA+ + P R++Q
Sbjct: 33 WYSYLVDVDADVDDDMISLRVLPNARAALIRAVADAPGRREEQ 75
>03_06_0776 - 36176390-36177589
Length = 399
Score = 29.1 bits (62), Expect = 2.1
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = +1
Query: 403 QKNIKHNGNISLEDVVGIAKIMRNRSMARY 492
+K+I++ G++ LE + K+M +RSM RY
Sbjct: 113 EKSIQNIGSLELERNAAVEKLMSSRSMHRY 142
>11_01_0669 -
5454116-5454153,5454569-5454770,5454865-5455029,
5455278-5456183
Length = 436
Score = 27.9 bits (59), Expect = 4.9
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 118 KMPPK-FDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKV 246
K+P + F N +KIV ++C G EV +G G+ +K+
Sbjct: 369 KIPEEPFVSNHLKIVEIKCKGKEVMWVCKFLKTLGTFGIPLEKI 412
>07_03_0313 + 16620817-16621515
Length = 232
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = -3
Query: 284 PFQSLVALAMSSPTFLGDRPRGPILGAKDDVAPTSPPTHRKFTILI 147
PF +A++ D +LGAK D+ S P H K +L+
Sbjct: 15 PFGQRCRIALAEKKLPYDYSEQELLGAKSDLLLRSNPIHAKVPVLL 60
>04_04_1551 -
34348110-34348225,34348468-34348606,34348658-34348896,
34349042-34349140,34349207-34350188,34350737-34350832,
34350936-34351064,34351253-34351332,34351420-34351661,
34351743-34352692
Length = 1023
Score = 27.5 bits (58), Expect = 6.5
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +1
Query: 160 NLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIA 261
N +C G E G S AP++ PLG+ PK G+ IA
Sbjct: 736 NSKCAGAE-GINS--APRVTPLGIRPKG-GESIA 765
>07_01_1116 +
10308029-10308111,10308575-10308737,10308996-10309062,
10309120-10309375,10309658-10309781,10310039-10310077
Length = 243
Score = 27.1 bits (57), Expect = 8.6
Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = -2
Query: 363 DKGCCRGNNSYLGL-SVLNCQLHSD 292
D GCC SYLGL +L C++++D
Sbjct: 62 DCGCCYALPSYLGLFHILICKVYAD 86
>04_04_1574 - 34536744-34537136,34541247-34541405,34541497-34542411,
34543642-34543731,34544324-34544390,34544483-34544676,
34544770-34545510,34545596-34545661,34545783-34545908,
34545978-34546073,34546153-34546521,34546602-34546724,
34546802-34546906,34547394-34547531,34547665-34547760,
34548018-34548275
Length = 1311
Score = 27.1 bits (57), Expect = 8.6
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = -1
Query: 271 LWPWQCHHPPF*ETDQEDRF*GPKMMWHRLPRRHIA 164
+W C H P+ E D E R GP L R I+
Sbjct: 1182 MWMLNCRHQPYREEDGELRIVGPPHQHAHLKRVRIS 1217
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,711,638
Number of Sequences: 37544
Number of extensions: 304563
Number of successful extensions: 800
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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