Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15o03
         (603 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   4.9  
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    25   6.4  
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5...    25   6.4  
SPAC16E8.04c |||chorismate mutase |Schizosaccharomyces pombe|chr...    25   8.5  
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    25   8.5  

>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = +2

Query: 362 ETFQRLRNKNLTTLNKIKYDSELLLHYL 445
           + ++    +NLT  N+++ D +  +HYL
Sbjct: 146 DVYEFFGGENLTLFNQVRVDCQCYIHYL 173


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 18/50 (36%), Positives = 22/50 (44%)
 Frame = +2

Query: 320 PTLLESISKKISTTETFQRLRNKNLTTLNKIKYDSELLLHYLYDDQQNKN 469
           P +L S+  K   TE   R  N  LT L     + E  + Y  DD  NKN
Sbjct: 517 PVVLYSLQSK--DTEVRSRALNLILTFLELRNENLEFSIIYGMDDNDNKN 564


>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
           Taf72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 643

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +2

Query: 335 SISKKISTTETFQRLR-NKNLTTLNKIKYDSELLLHYLYDDQQNKNS 472
           S+   ++   T Q+ R NK     ++I +D  LLLH+L+++  N  S
Sbjct: 129 SLPSHVAEDRTAQQYRQNKYQLHFSRITFD--LLLHFLFENVSNGGS 173


>SPAC16E8.04c |||chorismate mutase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 251

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 8/17 (47%), Positives = 15/17 (88%)
 Frame = -3

Query: 442 IMKQQFTIVFNFVQRCQ 392
           +++Q+ TI+FNF++R Q
Sbjct: 17  LIRQEDTIIFNFLERAQ 33


>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1183

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +1

Query: 355 DDGDVSAPKKQKLDNAEQN*IR**TVASLFVR*SAE 462
           ++G +S+ KK++LD   +N ++   VASL  + + E
Sbjct: 80  NEGSISSKKKKRLDKYIENKLKKEEVASLIAKLAEE 115


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,810,775
Number of Sequences: 5004
Number of extensions: 26817
Number of successful extensions: 83
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)