Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15n23
         (274 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|...    25   1.5  
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    25   1.9  
SPBC800.11 |||inosine-uridine preferring nucleoside hydrolase |S...    25   2.5  
SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce...    25   2.5  
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact...    24   4.4  
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar...    24   4.4  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    23   7.8  

>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 503

 Score = 25.4 bits (53), Expect = 1.5
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = -2

Query: 150 LELNLQRGRPLIYGRPRALGQRYYESEHGGRPLFSRPPRSPIVCLVA 10
           +E+ +  G+  I      +  ++ +S HGGR     P    ++C VA
Sbjct: 9   VEITVPTGKTYIQPVGLFINNQHVDSVHGGRVKVYSPSTEKLICEVA 55


>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
           Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 25.0 bits (52), Expect = 1.9
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 144 LNLQRGRPLIYGRPRALGQRYYESEHGGRPLF 49
           + L+ G P++     + GQ + E+ HG  P F
Sbjct: 889 IKLEDGDPIVAYYDESTGQNFIETYHGTEPGF 920


>SPBC800.11 |||inosine-uridine preferring nucleoside hydrolase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 389

 Score = 24.6 bits (51), Expect = 2.5
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1

Query: 61  ASIVLSAASLAYCLPS 14
           AS VLS  +L YC+PS
Sbjct: 68  ASDVLSTGNLTYCIPS 83


>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 698

 Score = 24.6 bits (51), Expect = 2.5
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 125 LPRCKFSSRQRAGESRPLQKKRREPSHKKRLAP 223
           + R K SS QRA ++ P   +RR  SH  +  P
Sbjct: 58  MKRSKESSAQRAFQALPRCLRRRAASHNIKRIP 90


>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
           complex associated protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 710

 Score = 23.8 bits (49), Expect = 4.4
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 92  PSARGRP*IRGLPRCKFSSRQRAGESRPLQKKR 190
           PS++    ++ L R K  SRQ+   S PL+  R
Sbjct: 163 PSSKSDVNVQMLARLKSKSRQKISSSDPLEDLR 195


>SPCC1235.09 |||histone deacetylase complex
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 564

 Score = 23.8 bits (49), Expect = 4.4
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -2

Query: 165 SPARCLELNLQRGRPLI 115
           SP  C++ NL+ G P++
Sbjct: 433 SPVNCIDWNLREGTPIL 449


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 23.0 bits (47), Expect = 7.8
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -2

Query: 249 LVA*PAQGVGASLFLCDGSLLFFWRGLDSPARCL 148
           L++     + A L    GS+L F  G+ + ARC+
Sbjct: 797 LISRLVSSIDAELGSSSGSILVFLPGVSNIARCI 830


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 915,291
Number of Sequences: 5004
Number of extensions: 13916
Number of successful extensions: 48
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 59659786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)