Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc15n23
(274 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0436 - 17558603-17559265,17559322-17559384 28 1.2
07_01_0237 + 1732277-1732379,1732468-1732508,1732607-1732930 26 3.6
10_08_0966 + 21921343-21921354,21923196-21923264,21924165-21924266 26 4.7
08_01_0656 + 5652383-5653009,5653260-5653736,5654969-5655289,565... 26 4.7
04_04_0596 - 26497863-26497913,26498010-26498081,26499015-264990... 26 4.7
06_03_0794 - 24671955-24672362,24672469-24672505,24672804-246728... 25 6.3
05_05_0227 - 23449579-23450459,23450574-23450691 25 6.3
05_03_0099 + 8382050-8382484 25 6.3
02_04_0466 - 23149906-23150046,23150129-23150279,23151684-231517... 25 6.3
10_08_0540 + 18635647-18635916 25 8.3
08_02_1624 - 28334067-28335851 25 8.3
05_04_0040 + 17429281-17429371,17429433-17430150,17431387-174314... 25 8.3
>09_04_0436 - 17558603-17559265,17559322-17559384
Length = 241
Score = 27.9 bits (59), Expect = 1.2
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +2
Query: 62 PPCSDS**RWPSARGRP*IRGLPRCKFSSRQRAGESRPLQKKRREPSHKKR 214
PPC R PS+R +R P C S + + + ++R++ KKR
Sbjct: 190 PPCQ----RHPSSRASRAVRTTPPCCSSLAENIAQGKKTGERRKKMGEKKR 236
>07_01_0237 + 1732277-1732379,1732468-1732508,1732607-1732930
Length = 155
Score = 26.2 bits (55), Expect = 3.6
Identities = 18/59 (30%), Positives = 25/59 (42%)
Frame = -2
Query: 192 LLFFWRGLDSPARCLELNLQRGRPLIYGRPRALGQRYYESEHGGRPLFSRPPRSPIVCL 16
L+F S AR L L L + +G++ G R + SRPPR VC+
Sbjct: 23 LIFSMEVAHSDARRLPLKLLEVGNIKEEPDETIGEKMEMEMEGRRLIGSRPPRCERVCM 81
>10_08_0966 + 21921343-21921354,21923196-21923264,21924165-21924266
Length = 60
Score = 25.8 bits (54), Expect = 4.7
Identities = 10/41 (24%), Positives = 24/41 (58%)
Frame = +2
Query: 92 PSARGRP*IRGLPRCKFSSRQRAGESRPLQKKRREPSHKKR 214
P+ + +RGLP+ K +++ + + +KK+++ KK+
Sbjct: 15 PAEPAKGGLRGLPKKKKKKKKKKKKKKKKKKKKKKKKKKKK 55
>08_01_0656 +
5652383-5653009,5653260-5653736,5654969-5655289,
5655434-5655589,5656062-5656127,5656196-5656315
Length = 588
Score = 25.8 bits (54), Expect = 4.7
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -2
Query: 75 SEHGGRPLFSRPPRSPIVCLVA 10
S H RP F PP +C+VA
Sbjct: 345 SSHVSRPAFRPPPARVTICIVA 366
>04_04_0596 -
26497863-26497913,26498010-26498081,26499015-26499093,
26499440-26499553,26499822-26499871,26500353-26500398,
26501100-26501719
Length = 343
Score = 25.8 bits (54), Expect = 4.7
Identities = 10/37 (27%), Positives = 23/37 (62%)
Frame = +2
Query: 143 SSRQRAGESRPLQKKRREPSHKKRLAPTPCAGQATRT 253
SS + +GE R ++K +E H++R + + +G ++ +
Sbjct: 70 SSGEDSGERRKRRRKEKERRHRRRRSRSASSGSSSES 106
>06_03_0794 -
24671955-24672362,24672469-24672505,24672804-24672858,
24674044-24674167,24674670-24674903
Length = 285
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -2
Query: 117 IYGRPRALGQRYYESEHGGRPLFSRPPRSP 28
+YG PR +G Y G+P+ P SP
Sbjct: 164 VYGGPRTVGPAVYPYGQFGQPVPGDQPYSP 193
>05_05_0227 - 23449579-23450459,23450574-23450691
Length = 332
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +2
Query: 146 SRQRAGESRPLQKKRREPSHKKRLAPTPCAGQATRTV*TPK 268
S +RA E RPL ++ R PS T + ++ TP+
Sbjct: 76 SDRRADEVRPLSRRTRRPSSSSDWTTTTDSERSEEAFYTPR 116
>05_03_0099 + 8382050-8382484
Length = 144
Score = 25.4 bits (53), Expect = 6.3
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 86 RWPSARGRP*IRGLPRCKFSSRQRAGESR-PLQKKRREPSHKKRLAP 223
RW A P +R R + ++RQ+ +R PL+K+RRE + P
Sbjct: 91 RW-EALAPPPVRDERRRRRATRQQGEAAREPLEKRRREAARSGGFPP 136
>02_04_0466 -
23149906-23150046,23150129-23150279,23151684-23151785,
23151893-23152110,23152203-23152325,23152863-23152991,
23153191-23153274,23154009-23154104,23154735-23154816,
23155047-23155117,23155269-23155363,23156090-23156276,
23156586-23156757,23157800-23157948,23158578-23158701,
23158836-23158991,23159101-23159247,23160470-23160489
Length = 748
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +2
Query: 155 RAGESRPLQKKRREPSHKKRLAPTPCAGQAT 247
R G++RP + P K + PCA AT
Sbjct: 636 REGQNRPEEMSWIAPPRKANVVAIPCAATAT 666
>10_08_0540 + 18635647-18635916
Length = 89
Score = 25.0 bits (52), Expect = 8.3
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -2
Query: 132 RGRPLIYGRPRALGQRYYE 76
+ RPL+ RP+AL + YY+
Sbjct: 60 KDRPLMLSRPQALPEYYYD 78
>08_02_1624 - 28334067-28335851
Length = 594
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -2
Query: 177 RGLDSPARCLELNLQRGRPLIY 112
RG D P + L RGRPL+Y
Sbjct: 401 RGADGPVYTSDGILLRGRPLVY 422
>05_04_0040 +
17429281-17429371,17429433-17430150,17431387-17431435,
17431540-17431785,17432266-17432673
Length = 503
Score = 25.0 bits (52), Expect = 8.3
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +3
Query: 222 LRPAPVKPRGPCERXKK 272
+ P +K +GPC+R KK
Sbjct: 335 IHPPNIKSKGPCKRIKK 351
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,002,290
Number of Sequences: 37544
Number of extensions: 127223
Number of successful extensions: 386
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of database: 14,793,348
effective HSP length: 69
effective length of database: 12,202,812
effective search space used: 256259052
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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