Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15n23
         (274 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC009062-1|AAH09062.1|  198|Homo sapiens Unknown (protein for IM...    29   2.0  
AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein pro...    29   2.0  
AB016091-1|BAA83717.1| 1275|Homo sapiens RNA binding protein pro...    29   2.0  
AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein.     29   2.0  
AB058756-1|BAB47482.1|  708|Homo sapiens KIAA1853 protein protein.     28   4.6  

>BC009062-1|AAH09062.1|  198|Homo sapiens Unknown (protein for
           IMAGE:3875076) protein.
          Length = 198

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +2

Query: 92  PSARGRP*IRGLPRCKFSSRQRAGESRPLQKKRREPSHKKRL-APTP 229
           P  R RP  +  PR + SS    G  R  +   R PSHK+R   P+P
Sbjct: 141 PVERRRPSPQPSPRDQQSSSSERGSRRGQRGDSRSPSHKRRRETPSP 187


>AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein protein.
          Length = 2752

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +2

Query: 92   PSARGRP*IRGLPRCKFSSRQRAGESRPLQKKRREPSHKKRL-APTP 229
            P  R RP  +  PR + SS    G  R  +   R PSHK+R   P+P
Sbjct: 2695 PVERRRPSPQPSPRDQQSSSSERGSRRGQRGDSRSPSHKRRRETPSP 2741


>AB016091-1|BAA83717.1| 1275|Homo sapiens RNA binding protein protein.
          Length = 1275

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +2

Query: 92   PSARGRP*IRGLPRCKFSSRQRAGESRPLQKKRREPSHKKRL-APTP 229
            P  R RP  +  PR + SS    G  R  +   R PSHK+R   P+P
Sbjct: 1218 PVERRRPSPQPSPRDQQSSSSERGSRRGQRGDSRSPSHKRRRETPSP 1264


>AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein.
          Length = 2800

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +2

Query: 92   PSARGRP*IRGLPRCKFSSRQRAGESRPLQKKRREPSHKKRL-APTP 229
            P  R RP  +  PR + SS    G  R  +   R PSHK+R   P+P
Sbjct: 2743 PVERRRPSPQPSPRDQQSSSSERGSRRGQRGDSRSPSHKRRRETPSP 2789


>AB058756-1|BAB47482.1|  708|Homo sapiens KIAA1853 protein protein.
          Length = 708

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 131 RCKFSSRQRAGESRPLQKKRREPSHKKRLAPTP 229
           R  FS ++R   S P  K+R E  HKK+    P
Sbjct: 242 RRSFSKKRRHSSSSPKSKRRDEKRHKKQSRSRP 274


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,054,619
Number of Sequences: 237096
Number of extensions: 630965
Number of successful extensions: 1889
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1889
length of database: 76,859,062
effective HSP length: 68
effective length of database: 60,736,534
effective search space used: 1336203748
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)