Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15n23
         (274 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   0.52 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   3.7  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    20   4.8  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              20   4.8  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    19   8.4  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 0.52
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -2

Query: 75   SEHGGRPLFSRPPRSPIVCL 16
            S  GGRP+  RP R P V L
Sbjct: 1358 SASGGRPVPERPERVPTVDL 1377


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.6 bits (41), Expect = 3.7
 Identities = 10/37 (27%), Positives = 16/37 (43%)
 Frame = +2

Query: 164 ESRPLQKKRREPSHKKRLAPTPCAGQATRTV*TPKKK 274
           +S P+         KK+L+P    G     + TP+ K
Sbjct: 257 KSEPIDAYEMHQISKKKLSPATPKGSKCSMITTPEIK 293


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 20.2 bits (40), Expect = 4.8
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 260 FTRSSWLDRRRA 225
           + R SW+DRR A
Sbjct: 56  YFRQSWVDRRLA 67


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.2 bits (40), Expect = 4.8
 Identities = 7/27 (25%), Positives = 17/27 (62%)
 Frame = -3

Query: 116 FMVAHAHSASAIMSPSTVGVHCSLGRL 36
           +MV+ ++ A  +++  T  ++C +G L
Sbjct: 858 YMVSPSNDALFVLNGETRTINCEIGGL 884


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 19.4 bits (38), Expect = 8.4
 Identities = 8/25 (32%), Positives = 11/25 (44%)
 Frame = +2

Query: 158 AGESRPLQKKRREPSHKKRLAPTPC 232
           A   +PL   ++ PS   R    PC
Sbjct: 869 ADSQQPLNLSKKSPSPSPRPLVGPC 893


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,237
Number of Sequences: 438
Number of extensions: 1074
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  5263398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)