Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc15n15
(553 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 114 7e-27
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz... 57 2e-09
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 47 2e-06
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 44 1e-05
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr... 30 0.20
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 30 0.26
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 29 0.46
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 29 0.46
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 29 0.46
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 29 0.46
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb... 29 0.60
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 29 0.60
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo... 27 1.4
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 27 2.4
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 25 5.6
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual 25 5.6
SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces pom... 25 5.6
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|... 25 5.6
SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA methyltransfera... 25 7.4
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 25 7.4
SPAPB17E12.10c |||SAM-dependent methyltransferase|Schizosaccharo... 25 7.4
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 25 9.8
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 25 9.8
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 25 9.8
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 114 bits (275), Expect = 7e-27
Identities = 57/143 (39%), Positives = 73/143 (51%), Gaps = 13/143 (9%)
Frame = +3
Query: 162 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKE--EADRCYRCNG 335
CY C GH ARECT+G + C+ CN+TGH A +C E + CY C
Sbjct: 19 CYNCGENGHQARECTKGSI-------------CYNCNQTGHKASECTEPQQEKTCYACGT 65
Query: 336 TGHIARECAQSPDE---PSCYNCNKTGHIARNCPEGGRES--------ATQTCYNCNKSG 482
GH+ R+C SP+ CY C + GHIAR+C G++S + CY C G
Sbjct: 66 AGHLVRDCPSSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYG 125
Query: 483 HISRNCPDGTKTCYVCGKPGHIS 551
H +R+C G K CY CGK GH S
Sbjct: 126 HQARDCTMGVK-CYSCGKIGHRS 147
Score = 99.5 bits (237), Expect = 3e-22
Identities = 53/150 (35%), Positives = 72/150 (48%), Gaps = 18/150 (12%)
Frame = +3
Query: 156 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDC-----KEEADRC 320
S+CY CN+TGH A ECT+ +Q + C+ C GH RDC + C
Sbjct: 36 SICYNCNQTGHKASECTE----------PQQEKTCYACGTAGHLVRDCPSSPNPRQGAEC 85
Query: 321 YRCNGTGHIARECAQSPDEP-----------SCYNCNKTGHIARNCPEGGRESATQTCYN 467
Y+C GHIAR+C + + +CY C GH AR+C G + CY+
Sbjct: 86 YKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMGVK------CYS 139
Query: 468 CNKSGHISRNCPDGT--KTCYVCGKPGHIS 551
C K GH S C + + CY C +PGHI+
Sbjct: 140 CGKIGHRSFECQQASDGQLCYKCNQPGHIA 169
Score = 93.9 bits (223), Expect = 1e-20
Identities = 42/114 (36%), Positives = 56/114 (49%), Gaps = 13/114 (11%)
Frame = +3
Query: 243 RQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARN 422
R +C+ C GH AR+C + CY CN TGH A EC + E +CY C GH+ R+
Sbjct: 14 RPGPRCYNCGENGHQARECTK-GSICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRD 72
Query: 423 CPEGGRESATQTCYNCNKSGHISRNC-PDGTKT------------CYVCGKPGH 545
CP CY C + GHI+R+C +G ++ CY CG GH
Sbjct: 73 CPSSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGH 126
Score = 93.5 bits (222), Expect = 2e-20
Identities = 43/99 (43%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Frame = +3
Query: 132 SKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDS-GFNRQREKCFKCNRTGHFARDCKEE 308
S P + CYKC R GH AR+C G S G +R C+ C GH ARDC
Sbjct: 75 SSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMG 134
Query: 309 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 425
+CY C GH + EC Q+ D CY CN+ GHIA NC
Sbjct: 135 V-KCYSCGKIGHRSFECQQASDGQLCYKCNQPGHIAVNC 172
Score = 31.9 bits (69), Expect = 0.065
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 144 AMSSSVCYKCNRTGHFARECT 206
A +CYKCN+ GH A CT
Sbjct: 153 ASDGQLCYKCNQPGHIAVNCT 173
>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 218
Score = 57.2 bits (132), Expect = 2e-09
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 8/99 (8%)
Frame = +3
Query: 243 RQREK-CFKCNRTGHFARDCKEEADR---CYRCNGTGHIARECA-QSPDE-PSCYNCNKT 404
R R+K CF C + GH +DC E D C+RC H C+ + P + C+ C++
Sbjct: 73 RNRDKFCFACRQQGHIVQDCPEAKDNVSICFRCGSKEHSLNACSKKGPLKFAKCFICHEN 132
Query: 405 GHIARNCPEG--GRESATQTCYNCNKSGHISRNCPDGTK 515
GH++ C + G C C+ H++++C K
Sbjct: 133 GHLSGQCEQNPKGLYPKGGCCKFCSSVHHLAKDCDQVNK 171
Score = 47.2 bits (107), Expect = 2e-06
Identities = 24/106 (22%), Positives = 50/106 (47%), Gaps = 9/106 (8%)
Frame = +3
Query: 162 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEAD----RCYRC 329
C+ C + GH ++C + ++D+ CF+C H C ++ +C+ C
Sbjct: 79 CFACRQQGHIVQDCPE----AKDN-----VSICFRCGSKEHSLNACSKKGPLKFAKCFIC 129
Query: 330 NGTGHIARECAQSPD--EPS---CYNCNKTGHIARNCPEGGRESAT 452
+ GH++ +C Q+P P C C+ H+A++C + ++ +
Sbjct: 130 HENGHLSGQCEQNPKGLYPKGGCCKFCSSVHHLAKDCDQVNKDDVS 175
Score = 43.2 bits (97), Expect = 3e-05
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Frame = +3
Query: 351 RECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC----PDGTKT 518
R Q + C+ C + GHI ++CPE + C+ C H C P
Sbjct: 68 RRINQRNRDKFCFACRQQGHIVQDCPEA--KDNVSICFRCGSKEHSLNACSKKGPLKFAK 125
Query: 519 CYVCGKPGHIS 551
C++C + GH+S
Sbjct: 126 CFICHENGHLS 136
Score = 37.9 bits (84), Expect = 0.001
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Frame = +3
Query: 156 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKE-------EAD 314
S+C++C H C++ G + + KCF C+ GH + C++ +
Sbjct: 100 SICFRCGSKEHSLNACSKKGPL--------KFAKCFICHENGHLSGQCEQNPKGLYPKGG 151
Query: 315 RCYRCNGTGHIARECAQ 365
C C+ H+A++C Q
Sbjct: 152 CCKFCSSVHHLAKDCDQ 168
Score = 30.3 bits (65), Expect = 0.20
Identities = 15/58 (25%), Positives = 25/58 (43%)
Frame = +3
Query: 132 SKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKE 305
SK + + C+ C+ GH + +C Q G + C C+ H A+DC +
Sbjct: 116 SKKGPLKFAKCFICHENGHLSGQCEQ-----NPKGLYPKGGCCKFCSSVHHLAKDCDQ 168
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 47.2 bits (107), Expect = 2e-06
Identities = 28/94 (29%), Positives = 39/94 (41%), Gaps = 16/94 (17%)
Frame = +3
Query: 270 NRTGHFARDCKEEADRCYRCNGTGHIAREC----------------AQSPDEPSCYNCNK 401
+R +F D E+ C+ C G GHI+++C + P C NC
Sbjct: 74 SRGRYFGSD-PSESIVCHNCKGNGHISKDCPHVLCTTCGAIDDHISVRCPWTKKCMNCGL 132
Query: 402 TGHIARNCPEGGRESATQTCYNCNKSGHISRNCP 503
GHIA C E R+ + C C+ H S CP
Sbjct: 133 LGHIAARCSE-PRKRGPRVCRTCHTDTHTSSTCP 165
Score = 43.6 bits (98), Expect = 2e-05
Identities = 23/57 (40%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +3
Query: 384 CYNCNKTGHIARNCPEGGRESATQTCYNCNK-SGHISRNCPDGTKTCYVCGKPGHIS 551
C+NC GHI+++CP C C HIS CP TK C CG GHI+
Sbjct: 89 CHNCKGNGHISKDCPH-------VLCTTCGAIDDHISVRCP-WTKKCMNCGLLGHIA 137
Score = 41.1 bits (92), Expect = 1e-04
Identities = 32/130 (24%), Positives = 47/130 (36%), Gaps = 6/130 (4%)
Frame = +3
Query: 153 SSVCYKCNRTGHFAREC------TQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEAD 314
S VC+ C GH +++C T G + S +KC C GH A C E
Sbjct: 86 SIVCHNCKGNGHISKDCPHVLCTTCGAIDDHISVRCPWTKKCMNCGLLGHIAARCSEPRK 145
Query: 315 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISR 494
R R T H + + Y K + + E + CYNC H
Sbjct: 146 RGPRVCRTCHTDTHTSSTCPLIWRYYVEKEHPVRIDVSE-----VRKFCYNCASDEHFGD 200
Query: 495 NCPDGTKTCY 524
+C +++ Y
Sbjct: 201 DCTLPSRSNY 210
Score = 35.1 bits (77), Expect = 0.007
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +3
Query: 432 GGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGK-PGHIS 551
G S + C+NC +GHIS++CP C CG HIS
Sbjct: 80 GSDPSESIVCHNCKGNGHISKDCPH--VLCTTCGAIDDHIS 118
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 44.0 bits (99), Expect = 1e-05
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +3
Query: 384 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCP 503
C NC GH +CPE + C +C GHI+R+CP
Sbjct: 311 CQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDCP 350
Score = 36.7 bits (81), Expect = 0.002
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Frame = +3
Query: 246 QREKCFKCNRTGHFARDCKEEADR-----CYRCNGTGHIARECAQSPDEP 380
+ + C C GH DC E + C C GHIAR+C +P
Sbjct: 307 ENQVCQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDCPVRDQQP 356
Score = 32.7 bits (71), Expect = 0.037
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 5/43 (11%)
Frame = +3
Query: 438 RESATQTCYNCNKSGHISRNCPDGTK-----TCYVCGKPGHIS 551
R+ Q C NC GH +CP+ C CG GHI+
Sbjct: 304 RDDENQVCQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIA 346
Score = 27.1 bits (57), Expect = 1.8
Identities = 15/49 (30%), Positives = 20/49 (40%)
Frame = +3
Query: 153 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDC 299
+ VC C GH +C + R + + C C GH ARDC
Sbjct: 308 NQVCQNCGNVGHRRFDCPE-----RIN--HTMNIVCRHCGSIGHIARDC 349
>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 506
Score = 30.3 bits (65), Expect = 0.20
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Frame = +3
Query: 420 NCPEGGRESATQTCYN----CNKSGHISRNCPDGTKTCYVC 530
+CP+G E T C+N C +G+IS P VC
Sbjct: 66 DCPDGSDEPGTSACHNGKFFCKNTGYISSYIPSNRVDDTVC 106
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 29.9 bits (64), Expect = 0.26
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +3
Query: 363 QSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCN-KSGHISRNCPDGTKTCYVCG 533
++ ++P+ N + N + T TC NC ++ + R PDG C CG
Sbjct: 603 KNAEKPTVSNAAEDKKGDANTRRANATNPTPTCTNCQTRTTPLWRRSPDGQPLCNACG 660
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 29.1 bits (62), Expect = 0.46
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 435 GRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKP 539
GR+ T+ C NC + GH+ N K C + G+P
Sbjct: 939 GRKPTTRKCSNCGQVGHMKTN-----KICPLFGRP 968
Score = 25.8 bits (54), Expect = 4.2
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = +3
Query: 363 QSPDEPSCYNCNKTGHIARN--CPEGGR 440
+ P C NC + GH+ N CP GR
Sbjct: 940 RKPTTRKCSNCGQVGHMKTNKICPLFGR 967
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 29.1 bits (62), Expect = 0.46
Identities = 24/108 (22%), Positives = 42/108 (38%), Gaps = 1/108 (0%)
Frame = +3
Query: 138 PIAMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFAR-DCKEEAD 314
P A +V K N GH E G V +S + K + +R G F+R +
Sbjct: 384 PKAAPKAVSQKTNVDGHRNHEAKHGNTVQNESKSQKSSNKEGRSSRGGFFSRLSFSRSSS 443
Query: 315 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQT 458
R + + H +PD P+ + ++ G+++ T+T
Sbjct: 444 RMKKGSKAKH-----EDAPDVPAIPHAYIADSSTKSSYRNGKKTPTRT 486
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 29.1 bits (62), Expect = 0.46
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +3
Query: 483 HISRNCPDGTKTCYVCGKPGH 545
H + CP TCY CGK H
Sbjct: 1794 HTGKACPVRLSTCYKCGKADH 1814
Score = 27.5 bits (58), Expect = 1.4
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +3
Query: 156 SVCYKCNRTGHFAREC 203
S CYKC + H REC
Sbjct: 1804 STCYKCGKADHNLREC 1819
Score = 27.1 bits (57), Expect = 1.8
Identities = 9/26 (34%), Positives = 11/26 (42%)
Frame = +3
Query: 282 HFARDCKEEADRCYRCNGTGHIAREC 359
H + C CY+C H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
Score = 25.0 bits (52), Expect = 7.4
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +3
Query: 456 TCYNCNKSGHISRNC 500
TCY C K+ H R C
Sbjct: 1805 TCYKCGKADHNLREC 1819
Score = 25.0 bits (52), Expect = 7.4
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +3
Query: 258 CFKCNRTGHFARDCK 302
C+KC + H R+CK
Sbjct: 1806 CYKCGKADHNLRECK 1820
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 29.1 bits (62), Expect = 0.46
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +3
Query: 483 HISRNCPDGTKTCYVCGKPGH 545
H + CP TCY CGK H
Sbjct: 1794 HTGKACPVRLSTCYKCGKADH 1814
Score = 27.5 bits (58), Expect = 1.4
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +3
Query: 156 SVCYKCNRTGHFAREC 203
S CYKC + H REC
Sbjct: 1804 STCYKCGKADHNLREC 1819
Score = 27.1 bits (57), Expect = 1.8
Identities = 9/26 (34%), Positives = 11/26 (42%)
Frame = +3
Query: 282 HFARDCKEEADRCYRCNGTGHIAREC 359
H + C CY+C H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
Score = 25.0 bits (52), Expect = 7.4
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +3
Query: 456 TCYNCNKSGHISRNC 500
TCY C K+ H R C
Sbjct: 1805 TCYKCGKADHNLREC 1819
Score = 25.0 bits (52), Expect = 7.4
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +3
Query: 258 CFKCNRTGHFARDCK 302
C+KC + H R+CK
Sbjct: 1806 CYKCGKADHNLRECK 1820
>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
membrane proteins, ESCRT 0 complex|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 610
Score = 28.7 bits (61), Expect = 0.60
Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 1/62 (1%)
Frame = -2
Query: 534 CRTRSTSWCRRDSCGRCGRTCCSYSRSAS-QTPAPPRDSSVRCGPSCCSCNTTARPGSVR 358
CRT T R+ C CG C+ S + P + VR SC S T + R
Sbjct: 179 CRTPFTFTNRKHHCRNCGGVFCNQCSSKTLSLPHLGINQPVRVCDSCYSLRTKPKGSKSR 238
Query: 357 TR 352
R
Sbjct: 239 AR 240
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 28.7 bits (61), Expect = 0.60
Identities = 26/87 (29%), Positives = 34/87 (39%), Gaps = 5/87 (5%)
Frame = -2
Query: 546 CGRACRTRSTSWCRRDSCGRCGRTCCSYSRSASQTPAPPRDSSVRCGPSCCSCNTTARPG 367
C AC S C + G S S ++S TP P SS+ P+ S TTA+
Sbjct: 821 CNGACYNPSQYGCDNGALGPVQ----SSSTTSSITPTPTTTSSITPTPTTTSTTTTAQST 876
Query: 366 SVRTRALCA-----PCRYICSNGQPLP 301
++ LC Y C N Q P
Sbjct: 877 GMQ---LCGSNYYDASSYYCDNDQLCP 900
>SPBC31F10.10c |||zf-MYND type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 27.5 bits (58), Expect = 1.4
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +3
Query: 240 NRQREKCFKCNRTGHFARDCKEEA 311
+RQ KC +C RT + +++C+ +A
Sbjct: 492 SRQFAKCRRCRRTKYCSKECQHQA 515
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 26.6 bits (56), Expect = 2.4
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Frame = +3
Query: 258 CFKCNRTGHFARDCKEEADRCY----RCNGTGHIARECAQSPDEPS 383
C++C + GH+ + C AD Y R T I R ++ + P+
Sbjct: 185 CYRCGQKGHWIQACPTNADPNYDGKPRVKRTTGIPRSFLKNVERPA 230
Score = 26.2 bits (55), Expect = 3.2
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 5/31 (16%)
Frame = +3
Query: 351 RECAQSPDEPS-----CYNCNKTGHIARNCP 428
R A PD+P CY C + GH + CP
Sbjct: 169 RIAASVPDKPPPPGYICYRCGQKGHWIQACP 199
Score = 26.2 bits (55), Expect = 3.2
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +3
Query: 459 CYNCNKSGHISRNCPDGTKTCYVCGKP 539
CY C + GH + CP Y GKP
Sbjct: 185 CYRCGQKGHWIQACPTNADPNY-DGKP 210
Score = 25.4 bits (53), Expect = 5.6
Identities = 6/15 (40%), Positives = 11/15 (73%)
Frame = +3
Query: 159 VCYKCNRTGHFAREC 203
+CY+C + GH+ + C
Sbjct: 184 ICYRCGQKGHWIQAC 198
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 25.4 bits (53), Expect = 5.6
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = -2
Query: 534 CRTRSTSWCRRDSCGRCGRTCCSY 463
C T T + R+ C CG+ C Y
Sbjct: 69 CETEFTLFRRKHHCRICGKIICKY 92
>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 25.4 bits (53), Expect = 5.6
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 250 VRSASSATAQDTLRGIARKRLTVA 321
VRSA S+ Q T R +A+ +TVA
Sbjct: 50 VRSARSSMEQPTFRPVAKNSVTVA 73
>SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 25.4 bits (53), Expect = 5.6
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +3
Query: 432 GGRESATQTCYNCNKSG 482
GG+E + ++C +CN SG
Sbjct: 144 GGKEGSVKSCASCNGSG 160
>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 461
Score = 25.4 bits (53), Expect = 5.6
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2
Query: 468 SYSRSASQTPAPPRDSSVRCGPSCCSCN 385
+YS + T APP SS G SC +CN
Sbjct: 417 TYSPTTLSTNAPPSPSS---GRSCSNCN 441
>SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA
methyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 548
Score = 25.0 bits (52), Expect = 7.4
Identities = 17/77 (22%), Positives = 28/77 (36%)
Frame = +3
Query: 228 DSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTG 407
D +E KC+ T F ++C E+ D N G E + S +
Sbjct: 87 DQNSELSQENLTKCDTTHDFEKNCSEKTDSTSADNIAGFTILEALSATGLRSIRYAKELP 146
Query: 408 HIARNCPEGGRESATQT 458
++ R E+A +T
Sbjct: 147 NVKRILANDLLENAVKT 163
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 25.0 bits (52), Expect = 7.4
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -1
Query: 457 VCVADSRPPSGQFRAMWP 404
V ++D RPP + RA WP
Sbjct: 302 VSISDYRPPKKRKRAAWP 319
>SPAPB17E12.10c |||SAM-dependent
methyltransferase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 301
Score = 25.0 bits (52), Expect = 7.4
Identities = 11/33 (33%), Positives = 14/33 (42%)
Frame = +3
Query: 237 FNRQREKCFKCNRTGHFARDCKEEADRCYRCNG 335
F CFKC + F K+E Y C+G
Sbjct: 257 FAEDLSMCFKCVKKIQFKTKIKDELYAVYFCSG 289
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 24.6 bits (51), Expect = 9.8
Identities = 18/77 (23%), Positives = 24/77 (31%), Gaps = 3/77 (3%)
Frame = -2
Query: 369 GSVRTRALCAPCRYICSNGQPLPCNPSQSVLCGCT*STSHVADXXXXXXXXXXXACIRAR 190
G R + PC +C G PC + C C + H C
Sbjct: 283 GKTRGQDCEHPCPLLCHPGPCPPCTATVEKFCLCGKESIHARCSNISKVNTEPFRCENVC 342
Query: 189 NARSGC---TCSKRLNS 148
+ C TC KR +S
Sbjct: 343 DELLPCGEHTCKKRCHS 359
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 24.6 bits (51), Expect = 9.8
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +2
Query: 101 LH*CLKCSRIFKTDRN 148
LH C+ C IF DRN
Sbjct: 425 LHWCINCRSIFSGDRN 440
>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 547
Score = 24.6 bits (51), Expect = 9.8
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = -2
Query: 201 IRARNARSGCTCSKRLNSLRSVLKILEHLRH*CNDRSTINYPMNLQI 61
+R+R S KR + L+ V LEHL+H + ++N + ++I
Sbjct: 411 LRSRVDISESKLKKRDDKLKRVSSQLEHLKHNYEEEKSMNENLLVRI 457
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,072,938
Number of Sequences: 5004
Number of extensions: 40020
Number of successful extensions: 202
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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