Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15n09
         (581 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68227-12|CAA92517.2|   86|Caenorhabditis elegans Hypothetical p...    69   2e-12
Z92826-7|CAD90171.2|   99|Caenorhabditis elegans Hypothetical pr...    28   5.6  
Z71265-2|CAA95834.2|  128|Caenorhabditis elegans Hypothetical pr...    28   5.6  
AC006834-8|AAF40006.1|  865|Caenorhabditis elegans Hypothetical ...    28   5.6  
Z81131-4|CAD01083.1|  415|Caenorhabditis elegans Hypothetical pr...    27   7.4  

>Z68227-12|CAA92517.2|   86|Caenorhabditis elegans Hypothetical
           protein F49C12.13 protein.
          Length = 86

 Score = 68.9 bits (161), Expect = 2e-12
 Identities = 27/54 (50%), Positives = 41/54 (75%), Gaps = 3/54 (5%)
 Frame = +3

Query: 63  IIQVVLILTAATCWLFWLCAYMAQMNPLIGPRLSNETLIWISRTWG---NKINN 215
           IIQ+++I+TA  CW+FW+  ++ Q+NPLIGP+++ +T+ WIS  WG   N INN
Sbjct: 33  IIQLMIIMTAVCCWMFWIMVFLHQLNPLIGPQINVKTIRWISEKWGDAPNVINN 86


>Z92826-7|CAD90171.2|   99|Caenorhabditis elegans Hypothetical
           protein C18D11.6 protein.
          Length = 99

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 207 FCFPKCVKSRLGFHC*VWAR*EGSSVP 127
           FC P  +K ++G H   W + E S  P
Sbjct: 23  FCAPATLKEKVGDHALTWTKVEASQTP 49


>Z71265-2|CAA95834.2|  128|Caenorhabditis elegans Hypothetical
           protein M05B5.2 protein.
          Length = 128

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = +3

Query: 21  FGVLTKVFIKNRFRIIQVVLILTAATCWLFWLCAYMAQM 137
           F + T   +      I ++L+L A +CW  W C    Q+
Sbjct: 84  FAIPTGAVVAIILAAIVLLLVLIAMSCWCCWCCPLYKQL 122


>AC006834-8|AAF40006.1|  865|Caenorhabditis elegans Hypothetical
           protein ZK973.2 protein.
          Length = 865

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 324 LNLNPKT*CNILLCRILVYLYSSKMNKV 407
           L+++P   C+ + C+++VY  S K N V
Sbjct: 790 LDIDPTAPCSFMTCQLIVYKTSEKKNPV 817


>Z81131-4|CAD01083.1|  415|Caenorhabditis elegans Hypothetical
           protein T24D1.5 protein.
          Length = 415

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 91  QRLVGCFGCVLTWHR*TLS 147
           Q+++GC  C++ WH   LS
Sbjct: 364 QQIIGCSACIVHWHHHALS 382


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,108,592
Number of Sequences: 27780
Number of extensions: 234567
Number of successful extensions: 420
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 420
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)