Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15n07
         (556 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1703.08c |||5-formyltetrahydrofolate cyclo-ligase|Schizosacc...    29   0.46 
SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr 1...    25   7.5  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    25   9.9  
SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyc...    25   9.9  
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    25   9.9  

>SPBC1703.08c |||5-formyltetrahydrofolate
           cyclo-ligase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 204

 Score = 29.1 bits (62), Expect = 0.46
 Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
 Frame = +3

Query: 333 IALNSELSKMAHLEFFIDKYWNKYQGYTVIDETGIPDNHYSMASINSCGELKSPGDPEKK 512
           +A + +LS++ H + + D Y +KYQ + +  E     +  +M  +  C  LK    P ++
Sbjct: 129 VAFDEKLSRLGHGKGYYDNYISKYQSWALQKE-----SRANMFKVGIC--LKEQILPNRE 181

Query: 513 IP-DTDAEK 536
           IP DT  +K
Sbjct: 182 IPMDTRDQK 190


>SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 386

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = +3

Query: 135 RFRNVILRYLLLKYHEKLIRKVKSLKTSLNEEACNFL 245
           +  N+ L+ L L+Y+E  +  V++LKT ++E+  + L
Sbjct: 270 KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLL 306


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1517

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -3

Query: 317 FKALLAPQNRVNE*LCFKKKLKVNQEI 237
           FK+   P+N ++E L  K+ LK+N+ +
Sbjct: 541 FKSPRTPENEISEVLLEKEALKLNEVV 567


>SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 447 HYSMASINSCGELKSPGDPEKKIPDTDAE 533
           H+S A +      K P +P+K +PD  AE
Sbjct: 153 HFSHAGLGDLKISKVPKNPKKILPDEAAE 181


>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 452 QHGVDKQLRGIEESRGPREKD 514
           + GVDKQLR +E +    E+D
Sbjct: 206 EEGVDKQLRVVEATEKEHEED 226


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,211,338
Number of Sequences: 5004
Number of extensions: 44751
Number of successful extensions: 107
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)