Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15n07
         (556 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF680280-1|ABS71855.1|  353|Drosophila melanogaster 3'-5' exonuc...    29   5.6  
EF680279-1|ABS71854.1|  354|Drosophila melanogaster 3'-5' exonuc...    29   5.6  
AY051647-1|AAK93071.1|  353|Drosophila melanogaster GM14514p pro...    29   5.6  
AE014297-2505|AAF55541.2|  353|Drosophila melanogaster CG7670-PA...    29   5.6  
AE014134-2359|AAF53310.1|  417|Drosophila melanogaster CG16850-P...    28   7.4  
AE014134-312|ABI31282.1| 2347|Drosophila melanogaster CG7337-PC,...    28   9.7  

>EF680280-1|ABS71855.1|  353|Drosophila melanogaster 3'-5'
           exonuclease variant 2 protein.
          Length = 353

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 522 YPGSFSLGPRDSSIPRSCLSTPCCSGYQ 439
           +P SF  GP  S++ + C+   CC  YQ
Sbjct: 165 WPFSFQTGPGKSAVIQICVDEKCCYIYQ 192


>EF680279-1|ABS71854.1|  354|Drosophila melanogaster 3'-5'
           exonuclease variant 1 protein.
          Length = 354

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 522 YPGSFSLGPRDSSIPRSCLSTPCCSGYQ 439
           +P SF  GP  S++ + C+   CC  YQ
Sbjct: 166 WPFSFQTGPGKSAVIQICVDEKCCYIYQ 193


>AY051647-1|AAK93071.1|  353|Drosophila melanogaster GM14514p
           protein.
          Length = 353

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 522 YPGSFSLGPRDSSIPRSCLSTPCCSGYQ 439
           +P SF  GP  S++ + C+   CC  YQ
Sbjct: 165 WPFSFQTGPGKSAVIQICVDEKCCYIYQ 192


>AE014297-2505|AAF55541.2|  353|Drosophila melanogaster CG7670-PA
           protein.
          Length = 353

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 522 YPGSFSLGPRDSSIPRSCLSTPCCSGYQ 439
           +P SF  GP  S++ + C+   CC  YQ
Sbjct: 165 WPFSFQTGPGKSAVIQICVDEKCCYIYQ 192


>AE014134-2359|AAF53310.1|  417|Drosophila melanogaster CG16850-PA
           protein.
          Length = 417

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +3

Query: 456 MASINSCGELKSPGDPEKKIPDTDAEKQPLS 548
           MAS     +L+ PG PE+ + D+ AE+QPL+
Sbjct: 265 MASPGHVAKLRRPG-PEELLFDSSAERQPLT 294


>AE014134-312|ABI31282.1| 2347|Drosophila melanogaster CG7337-PC,
            isoform C protein.
          Length = 2347

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +3

Query: 363  AHLEFFIDKYWNKYQGYTVIDETGIPDNHYSMASINSCGELKSPGD 500
            A  E  ID+   KY     +DE GIP ++   A++ + G L S GD
Sbjct: 1395 ADTEKMIDEITRKYGD---LDEPGIPASYSMPANLRNLGGLGSTGD 1437


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,504,318
Number of Sequences: 53049
Number of extensions: 439529
Number of successful extensions: 1166
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1166
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2131214097
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)