Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15n07
         (556 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78539-5|CAB01733.2| 1272|Caenorhabditis elegans Hypothetical pr...    29   3.0  
U88184-3|AAK31519.1|  648|Caenorhabditis elegans Hypothetical pr...    27   6.9  
U80953-2|AAB52556.1| 1107|Caenorhabditis elegans Hypothetical pr...    27   6.9  
U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical pr...    27   9.1  
U40945-1|AAA81719.2|  656|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>Z78539-5|CAB01733.2| 1272|Caenorhabditis elegans Hypothetical
           protein C31E10.8 protein.
          Length = 1272

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 18/55 (32%), Positives = 31/55 (56%)
 Frame = +3

Query: 150 ILRYLLLKYHEKLIRKVKSLKTSLNEEACNFLVHF*LFFEAELFVHSILRREQCF 314
           +L+ LL   H K+++ +KSL   +     N+ +   LFF+A  F +++LR   CF
Sbjct: 519 VLKGLLEVQHPKIMKHLKSLDIDVASFTLNWFIS--LFFDAVPF-NTLLRIWDCF 570


>U88184-3|AAK31519.1|  648|Caenorhabditis elegans Hypothetical
           protein F36H5.8 protein.
          Length = 648

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/37 (40%), Positives = 24/37 (64%)
 Frame = -1

Query: 214 VLRLFTLRISFS*YFNKR*RKITLRNRHSQSTEILHR 104
           +LR+F+  +S S    KR  K+TLR R+S S+  +H+
Sbjct: 260 LLRIFSDEVSISVCAYKRKEKLTLRLRNSLSSLEVHK 296


>U80953-2|AAB52556.1| 1107|Caenorhabditis elegans Hypothetical
           protein B0412.3 protein.
          Length = 1107

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 514 IFFSGSPGLFNSPQLFIDAML*WLS 440
           +FFS SPG++ +P L    +L W S
Sbjct: 312 VFFSSSPGIYPTPHLASIELLLWKS 336


>U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical protein
            B0207.5 protein.
          Length = 3279

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 379  KNSRCAIFDNSLFNAMKYGNYLKHCS 302
            K   C+I D S+ +  +Y ++ KHC+
Sbjct: 1821 KRIDCSIVDESMMSEEEYSDFKKHCN 1846


>U40945-1|AAA81719.2|  656|Caenorhabditis elegans Hypothetical
           protein F10D7.1 protein.
          Length = 656

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -1

Query: 100 CYIFTFLTAIYLGSFSN 50
           CYIFT+L  I+   FSN
Sbjct: 68  CYIFTYLINIFFSHFSN 84


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,070,417
Number of Sequences: 27780
Number of extensions: 251520
Number of successful extensions: 653
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)