Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15n07
         (556 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    26   0.22 
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    25   0.68 
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    24   1.2  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    24   1.2  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   3.6  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   4.8  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   6.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.4  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 26.2 bits (55), Expect = 0.22
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -1

Query: 382 IKNSRCAIFDNSLFNAMKYG-NYLKHCSR 299
           I+NSRCA FDN   N   +  N  +H S+
Sbjct: 409 IRNSRCANFDNQDNNHYNHNHNQARHSSK 437


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 24.6 bits (51), Expect = 0.68
 Identities = 14/34 (41%), Positives = 14/34 (41%)
 Frame = -2

Query: 552 SRKAVVSQRRYPGSFSLGPRDSSIPRSCLSTPCC 451
           S K     RR PG  S GPRD        S P C
Sbjct: 47  SLKLAFEPRRNPGPGSKGPRDFPRSHRFKSLPRC 80


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 18/80 (22%), Positives = 33/80 (41%)
 Frame = -3

Query: 542 RLFLSVGIRDLFLWVPGTLQFPAAVYRRHAVVVIRDTCLIYNSVALIFVPIFIYKEF*MR 363
           R+ ++V +     W P   Q   AVY +++     D  +I  ++      +F Y    + 
Sbjct: 285 RMLVAVVVAFFICWAPFHAQRLLAVYAQNSKDKPEDVLIIIYTILTYMSGVFYYLSTTVN 344

Query: 362 HFRQFTI*RYEIRELFKALL 303
               + I   + RE FK +L
Sbjct: 345 PL-LYNIMSNKFREAFKLML 363


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 382 IKNSRCAIFDNSLFNAMKYGN 320
           IKN+RCA  +N   N  KY N
Sbjct: 412 IKNTRCAKSNNQNNNQNKYKN 432


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 382 IKNSRCAIFDNSLFNAMKYGN 320
           I N+RCA  DN   N  K+ N
Sbjct: 578 IMNTRCANSDNQNNNQNKHNN 598


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +3

Query: 342 NSELSKMAHLEFFIDKYWNKYQGYTVIDETG 434
           NS    +   EF  + YW      T I+ETG
Sbjct: 49  NSNSGTINESEFNDENYWQCNDKKTDIEETG 79


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 428 LIYNSVALIFVPIFIYKEF 372
           L+Y  + +IF+P  IY+ F
Sbjct: 407 LVYIIMLIIFIPRNIYENF 425


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -2

Query: 183 SRDILTKDNVR*HYETDIHK 124
           SRD+  +  V  +Y+TD++K
Sbjct: 92  SRDVNVRAVVAQYYDTDVNK 111


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,331
Number of Sequences: 438
Number of extensions: 3119
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15949830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)