Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15n03
         (554 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    64   9e-13
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    25   0.68 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   0.90 
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   2.7  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   8.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   8.4  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 64.1 bits (149), Expect = 9e-13
 Identities = 37/120 (30%), Positives = 67/120 (55%), Gaps = 1/120 (0%)
 Frame = +1

Query: 175 KVAIVTASTEGIGYAIAKRLGHEGASVVISSRKEDNVENAVKSLRSDGITVEGIVCHVAN 354
           +VA+VT +  GIG  + + L  +G  V+  + + D ++  V+ L+S    +  + C ++N
Sbjct: 8   EVALVTGANSGIGKCLIECLVGKGMKVIGIAPQVDKMKTLVEELKSKPGKLVPLQCDLSN 67

Query: 355 SDHRKKLFEVAKSKFGGLDILVSNAAVNPTVSPILETDEQV-WDKIFEINVKSSWLLAQE 531
            +   K+ E  +   G +DIL++NA +N  V+  L+ DE + W KIF+IN+     + QE
Sbjct: 68  QNDILKVIEWVEKNLGAIDILINNATINIDVT--LQNDEVLDWKKIFDINLLGLTCMIQE 125


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 24.6 bits (51), Expect = 0.68
 Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = +1

Query: 340 CHVANSDHRKKL-FEVAKSK 396
           C V NS H+KKL F +AK +
Sbjct: 349 CSVTNSPHQKKLRFHLAKER 368


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 24.2 bits (50), Expect = 0.90
 Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 1/100 (1%)
 Frame = +1

Query: 31  KVEKFKHISTHGSLRVMFRLKFIRSLMNTKMSKTPN-FVRANHNDRLKGKVAIVTASTEG 207
           K+   KH     S++   +LK  R     K+S  PN   + N +  +K      + S EG
Sbjct: 653 KLMMLKHREFRSSIKASDKLKDSRIKTTEKLSTDPNTHFQVNQSHGIKRS---GSHSWEG 709

Query: 208 IGYAIAKRLGHEGASVVISSRKEDNVENAVKSLRSDGITV 327
             + ++K    E +    + +   NV   V S+  D  TV
Sbjct: 710 DSFKVSKH--EEVSRTSTAGQFPTNVATTVTSMSIDQSTV 747


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = +1

Query: 406 LDILVSNAAVNPTV---SPILETDEQVWDKIFEINVKS 510
           +D++V++    P V   SP  E   Q+W +I + ++ S
Sbjct: 263 VDLVVTSTYCEPQVVIVSPTRELTIQIWQQIVKFSLNS 300


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 236 PNLFAIA*PIPSVDAVTIATFPFNLSL 156
           PNL  ++ P   +DAVT   F + L L
Sbjct: 269 PNLSKLSDPEVWIDAVTQIFFSYALGL 295


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 236 PNLFAIA*PIPSVDAVTIATFPFNLSL 156
           PNL  ++ P   +DAVT   F + L L
Sbjct: 322 PNLSKLSDPEVWIDAVTQIFFSYALGL 348


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.131    0.368 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,915
Number of Sequences: 438
Number of extensions: 3149
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15949830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)