Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc15m22
(496 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos... 27 1.6
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 27 2.1
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|... 27 2.1
SPBC1921.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 26 3.6
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy... 25 4.7
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S... 25 6.3
SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase |Schizo... 25 6.3
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 25 8.3
SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase Ubp11|Schizo... 25 8.3
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 25 8.3
>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 27.1 bits (57), Expect = 1.6
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -3
Query: 479 LTIFHSIFPIAGLFLNIEEQTGRATYSLYSRGSTLDDVATVV 354
L IF SI + G F + + TG+A + +S + +D V V+
Sbjct: 11 LQIFGSILFLLGFFPHKNDSTGKAMSNQFSPPAVIDQVVFVM 52
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 26.6 bits (56), Expect = 2.1
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -2
Query: 231 QALYIDNDNNTRKSSNRHCYVQ*LNKGNISLQTGQRHSHYIIR 103
Q Y+D D +R + RH Y ++ ++ G+R Y IR
Sbjct: 910 QIAYMDEDPQSRHNDERHLYSVLIDGHCPIMENGKRRPKYRIR 952
>SPAC3A12.05c |taf2||TATA-binding protein associated factor
Taf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1174
Score = 26.6 bits (56), Expect = 2.1
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 102 ILLYNVNAFGQFVTIYFLCLVTE 170
+L YN NA +F YF+CL+ +
Sbjct: 853 LLCYNDNANNEFSDAYFICLLID 875
>SPBC1921.04c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 117
Score = 25.8 bits (54), Expect = 3.6
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 393 IQAIRCPAGLFFDIEKQTCDWKDAVKN 473
++A+RCP L+ + QT WK K+
Sbjct: 32 VRALRCPIWLWPTYDAQTIPWKKKKKS 58
>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 25.4 bits (53), Expect = 4.7
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +1
Query: 370 SSNVLPREYKLYVARPVCSSILRNRPAIGKML 465
S P Y++ + +P+C ++RN+ GK L
Sbjct: 42 SKRYFPDYYQI-IQKPICYKMMRNKAKTGKYL 72
>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 673
Score = 25.0 bits (52), Expect = 6.3
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 134 VCNDIFPLFSH*T*QCLLDDFRVLLSLSMY 223
VCN I +F+ +CLL D + LS+ Y
Sbjct: 636 VCNSIVAIFNPSQTKCLLADLQNELSICFY 665
>SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 944
Score = 25.0 bits (52), Expect = 6.3
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = -2
Query: 300 VLVPSFHLSLPSRQLVAAIGDHQQALYI 217
+L P+FH +P A DH A Y+
Sbjct: 280 ILWPTFHYQIPDNPKSKAYEDHSWANYV 307
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 24.6 bits (51), Expect = 8.3
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -1
Query: 415 AGQRIACIPEAVHWMTSRQLSPSP 344
A + +A VHW+ SR+ P P
Sbjct: 826 ADEAVAIYTTFVHWLESRRFQPIP 849
>SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase
Ubp11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 350
Score = 24.6 bits (51), Expect = 8.3
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 204 YYHYLCTALADGHRWRRQADETAKKDESLEQELCKDKDA 320
Y HYLC L D W+ A+++ SL + L + + A
Sbjct: 300 YGHYLCYRLQDDIWWK--ANDSLITKSSLNEALSQTRSA 336
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 24.6 bits (51), Expect = 8.3
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -1
Query: 103 ITVNTSLNLIEY*FIILHFLYS*LKCQL 20
ITVN S +E+ I+L +YS LK +L
Sbjct: 801 ITVNLSHLTVEHMSIVLRHVYSDLKVEL 828
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,937,472
Number of Sequences: 5004
Number of extensions: 37046
Number of successful extensions: 119
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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