Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15m22
         (496 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0152 + 11913917-11914328,11914391-11914507,11915424-11915587     30   1.2  
06_01_0504 + 3632108-3632281,3633532-3633699,3633797-3633883,363...    29   2.7  
12_02_0818 - 23427625-23429022                                         27   6.3  
10_08_0887 - 21311301-21311828,21312001-21312110,21312215-21312392     27   6.3  

>04_03_0152 + 11913917-11914328,11914391-11914507,11915424-11915587
          Length = 230

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
 Frame = +1

Query: 211 IIYVQRLLM----VTDGGDKLTRRQRKMKAWNKNY-ARTRTPANGSGW---WPARATTVA 366
           +I VQR+L       D G   T+R RK +AW  ++ A    P  G  W   + + +  ++
Sbjct: 45  LILVQRMLWPDHYAHDDGSYRTKRSRKYEAWRVDFDAGILVPVKGFNWRALFISMSRAIS 104

Query: 367 TSSNVLP 387
            S+  LP
Sbjct: 105 VSAETLP 111


>06_01_0504 +
           3632108-3632281,3633532-3633699,3633797-3633883,
           3634766-3634876,3635114-3635205,3635288-3635393,
           3635475-3635561,3637796-3638209
          Length = 412

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = -2

Query: 291 PSFHLSL-PSRQLVAAIGDHQQALYIDNDN 205
           P  H S+ P R+L+A +GD + AL +D+ N
Sbjct: 244 PVNHTSVSPDRKLLAVVGDDRDALLVDSRN 273


>12_02_0818 - 23427625-23429022
          Length = 465

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -2

Query: 279 LSLPSRQLVAAIGDHQQALYIDNDNNTRK 193
           L+LP    VAA  DH   L +D   NT K
Sbjct: 150 LTLPQSSRVAAAADHSTGLGLDTRTNTYK 178


>10_08_0887 - 21311301-21311828,21312001-21312110,21312215-21312392
          Length = 271

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +1

Query: 298 NYARTRTPANGSGWWPARAT 357
           NY  +   A GSGW PARAT
Sbjct: 27  NYNVSDASAYGSGWLPARAT 46


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,481,790
Number of Sequences: 37544
Number of extensions: 251472
Number of successful extensions: 818
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)