Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc15m22
(496 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U10438-1|AAA19083.3| 524|Caenorhabditis elegans Hypothetical pr... 40 7e-04
DQ340624-1|ABC65812.1| 524|Caenorhabditis elegans chondroitin p... 40 7e-04
U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical p... 37 0.009
Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical pr... 34 0.049
U00055-4|AAA50720.2| 431|Caenorhabditis elegans Hypothetical pr... 33 0.15
Z68105-3|CAA92121.2| 442|Caenorhabditis elegans Hypothetical pr... 30 1.1
AF003135-8|AAK18984.1| 235|Caenorhabditis elegans Hypothetical ... 29 1.9
U53153-7|AAC69037.1| 1280|Caenorhabditis elegans Hypothetical pr... 28 3.2
U70852-2|AAK29821.1| 1231|Caenorhabditis elegans Hypothetical pr... 28 4.3
U42835-2|AAA83586.1| 617|Caenorhabditis elegans Chitinase prote... 27 5.7
Z81550-4|CAB04477.1| 317|Caenorhabditis elegans Hypothetical pr... 27 9.9
Z68302-5|CAA92633.2| 382|Caenorhabditis elegans Hypothetical pr... 27 9.9
L14433-3|AAA27977.1| 2329|Caenorhabditis elegans Yeast prp (spli... 27 9.9
>U10438-1|AAA19083.3| 524|Caenorhabditis elegans Hypothetical
protein B0280.5 protein.
Length = 524
Score = 40.3 bits (90), Expect = 7e-04
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +3
Query: 378 CTASGIQAIRCPAGLFFDIEKQTCDWKDAVKNCK 479
CT + + + CP LF+D + Q C WK V+ CK
Sbjct: 158 CTTNTARFLSCPTPLFYDADSQKCIWKSLVEECK 191
Score = 28.3 bits (60), Expect = 3.2
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +3
Query: 378 CTASGIQAIRCPAGLFFDIEKQTCDWKDAVKNCK 479
CT + CPAGL F CD++ V C+
Sbjct: 327 CTNGRAIVMFCPAGLKFSESTVRCDYESNVSECQ 360
Score = 27.9 bits (59), Expect = 4.3
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = +3
Query: 372 IQCTASGIQAIRCPAGLFFDIEKQTCDWKDAVKNCK 479
+ C+ + + CPA L ++ CDW+ V C+
Sbjct: 42 LTCSGGIARIMDCPADLIYNEPLLICDWRHNVIGCE 77
Score = 27.9 bits (59), Expect = 4.3
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = +3
Query: 372 IQCTASGIQAIRCPAGLFFDIEKQTCDWKDAVKNC 476
+ C+ + + CPA L F+ CDW V C
Sbjct: 265 LTCSGGIARIMDCPASLVFNPTILVCDWPRDVAEC 299
Score = 27.5 bits (58), Expect = 5.7
Identities = 9/40 (22%), Positives = 18/40 (45%)
Frame = +3
Query: 369 VIQCTASGIQAIRCPAGLFFDIEKQTCDWKDAVKNCKLKN 488
V+ C + CP+ L F+ + CD+ C +++
Sbjct: 419 VLSCQNGHVDIFECPSSLVFNDQSLICDYPQTSLKCLIED 458
>DQ340624-1|ABC65812.1| 524|Caenorhabditis elegans chondroitin
proteoglycan-2 protein.
Length = 524
Score = 40.3 bits (90), Expect = 7e-04
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +3
Query: 378 CTASGIQAIRCPAGLFFDIEKQTCDWKDAVKNCK 479
CT + + + CP LF+D + Q C WK V+ CK
Sbjct: 158 CTTNTARFLSCPTPLFYDADSQKCIWKSLVEECK 191
Score = 28.3 bits (60), Expect = 3.2
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +3
Query: 378 CTASGIQAIRCPAGLFFDIEKQTCDWKDAVKNCK 479
CT + CPAGL F CD++ V C+
Sbjct: 327 CTNGRAIVMFCPAGLKFSESTVRCDYESNVSECQ 360
Score = 27.9 bits (59), Expect = 4.3
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = +3
Query: 372 IQCTASGIQAIRCPAGLFFDIEKQTCDWKDAVKNCK 479
+ C+ + + CPA L ++ CDW+ V C+
Sbjct: 42 LTCSGGIARIMDCPADLIYNEPLLICDWRHNVIGCE 77
Score = 27.9 bits (59), Expect = 4.3
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = +3
Query: 372 IQCTASGIQAIRCPAGLFFDIEKQTCDWKDAVKNC 476
+ C+ + + CPA L F+ CDW V C
Sbjct: 265 LTCSGGIARIMDCPASLVFNPTILVCDWPRDVAEC 299
Score = 27.5 bits (58), Expect = 5.7
Identities = 9/40 (22%), Positives = 18/40 (45%)
Frame = +3
Query: 369 VIQCTASGIQAIRCPAGLFFDIEKQTCDWKDAVKNCKLKN 488
V+ C + CP+ L F+ + CD+ C +++
Sbjct: 419 VLSCQNGHVDIFECPSSLVFNDQSLICDYPQTSLKCLIED 458
>U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical
protein C39D10.7 protein.
Length = 1185
Score = 36.7 bits (81), Expect = 0.009
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +3
Query: 351 GDNCRDV-IQCTASGIQAIRCPAGLFFDIEKQTCDWKDAVKNC 476
G +C D I C RCPAGLF+ CD+K+ V++C
Sbjct: 797 GLDCEDYYISCNNFETTINRCPAGLFYSKLNNRCDYKEHVEDC 839
Score = 31.1 bits (67), Expect = 0.46
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +3
Query: 360 CRDVIQCTASG-IQAIRCPAGLFFDIEKQTCDWKDAVKNCK 479
C+ V A+G + A CPA L F+ CD+ V++C+
Sbjct: 587 CKSVFYICANGQVVATTCPANLIFNPYVGECDYSTNVRDCQ 627
Score = 30.3 bits (65), Expect = 0.80
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +3
Query: 363 RDVIQCTASGIQAIRCPAGLFFDIEKQTCDWKDAVKNCKL 482
+D +QC C GLF++ + C +K V CK+
Sbjct: 904 QDYVQCMQGRSLISSCAPGLFYNEKNGMCAYKHTVDTCKI 943
Score = 29.5 bits (63), Expect = 1.4
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +3
Query: 375 QCTASGIQAIRCPAGLFFDIEKQTCDWKDAVKNC 476
QC+ + CP L + +++ CD+ ++VK+C
Sbjct: 223 QCSNGKLFRKTCPEKLIYVLDQNLCDFPESVKDC 256
Score = 28.3 bits (60), Expect = 3.2
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +3
Query: 351 GDNCRD-VIQCTASGIQAIRCPAGLFFDIEKQTCDWKDAVKNC 476
G +C +I+C CP+GL++ + CD K+ V+ C
Sbjct: 698 GFDCEKYLIKCYNRKTFKFPCPSGLYYSRLQDKCDVKENVEGC 740
>Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical protein
H02I12.1 protein.
Length = 1319
Score = 34.3 bits (75), Expect = 0.049
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +3
Query: 348 EGDNCRDVIQCTASGIQAIRCPAGLFFDIEKQTCDWKDAVKNC 476
+ +NC +C + CP+G F+ CDW AV +C
Sbjct: 1254 DANNCEVFYRCVWGRKVVMTCPSGTVFNPLLSVCDWPSAVPSC 1296
Score = 33.5 bits (73), Expect = 0.086
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 372 IQCTASGIQAIRCPAGLFFDIEKQTCDWKDAVKNCK 479
IQC+ S C L+FD Q+C ++D V C+
Sbjct: 802 IQCSDSAASVRECEGSLYFDERSQSCRFRDEVFKCQ 837
Score = 31.5 bits (68), Expect = 0.35
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +3
Query: 354 DNCRDVI-QCTASGIQAIRCPAGLFFDIEKQTCDWK 458
D C DV C+ + + CP G F+I +Q+CD++
Sbjct: 203 DGCNDVFYSCSNNMVFQRYCPPGTVFNINQQSCDFQ 238
Score = 29.5 bits (63), Expect = 1.4
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +3
Query: 372 IQCTASGIQAIRCPAGLFFDIEKQTCDWKDAVKNC 476
IQC+ RC L+F+ Q C ++D V C
Sbjct: 709 IQCSNGAAIVRRCGESLYFNEATQECTYRDEVPEC 743
>U00055-4|AAA50720.2| 431|Caenorhabditis elegans Hypothetical
protein R02F2.4 protein.
Length = 431
Score = 32.7 bits (71), Expect = 0.15
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +3
Query: 360 CRDVIQCTASGIQAIR-CPAGLFFDIEKQTCDWKDAVKNCKLKNKE 494
C +V + GI R CPA L F+ +CDW V +C K+++
Sbjct: 190 CSNVFFSCSEGIAHRRNCPANLVFNPAISSCDWPKNVMDCSEKSEK 235
Score = 30.7 bits (66), Expect = 0.61
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +3
Query: 360 CRDVIQCTASGIQAIR-CPAGLFFDIEKQTCDWKDAVKNCKLKN 488
C +GI + CP GL F + Q CD++ V C L++
Sbjct: 251 CSSSFSACTNGIPIVMFCPDGLMFSEKNQMCDYEWNVDECDLES 294
Score = 27.1 bits (57), Expect = 7.5
Identities = 10/41 (24%), Positives = 19/41 (46%)
Frame = +3
Query: 372 IQCTASGIQAIRCPAGLFFDIEKQTCDWKDAVKNCKLKNKE 494
+ C + + + CP L + + CDW+ V C + +E
Sbjct: 43 LACVSGEARYMDCPEDLVYHKNLEFCDWRHNVFECGEEGEE 83
>Z68105-3|CAA92121.2| 442|Caenorhabditis elegans Hypothetical
protein F13E6.4 protein.
Length = 442
Score = 29.9 bits (64), Expect = 1.1
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = -2
Query: 291 PSFHLSLPSRQLVAAIGDHQ--QALYIDNDNNTRKSSNRHCY 172
P H ++PS ++ I H+ Q L I NDNN S H Y
Sbjct: 400 PHMHNNMPSNYVIDDINPHEFDQYLQISNDNNRGVGSMVHHY 441
>AF003135-8|AAK18984.1| 235|Caenorhabditis elegans Hypothetical
protein W03F11.1 protein.
Length = 235
Score = 29.1 bits (62), Expect = 1.9
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +3
Query: 357 NCRDVIQCTASGIQAIR-CPAGLFFDIEKQTCD 452
NC++ QC ASG+ R C G +D K TCD
Sbjct: 171 NCKNFYQC-ASGLWTQRSCGEGTIWDQHKLTCD 202
>U53153-7|AAC69037.1| 1280|Caenorhabditis elegans Hypothetical
protein T19A5.1 protein.
Length = 1280
Score = 28.3 bits (60), Expect = 3.2
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +1
Query: 352 ATTVATSSNVLPREYKLYVARPVCSSILRNRPAIGKML*KI 474
ATT+ S + P +Y+ +A P+ LRNRPAI + K+
Sbjct: 487 ATTMICSLSCTPEKYEESMA-PLREKTLRNRPAINETSWKV 526
>U70852-2|AAK29821.1| 1231|Caenorhabditis elegans Hypothetical
protein F45E4.3a protein.
Length = 1231
Score = 27.9 bits (59), Expect = 4.3
Identities = 24/68 (35%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = +1
Query: 289 WNKNYARTRTPANGSGWWPARAT-TVATSSNVLPREYKLYVARPVCSSILRNRPAIGKML 465
W K A +R A S RA T TSSN + + Y RP+ S RN A M
Sbjct: 805 WPKEDALSRMYATASR---RRAQETALTSSNKISTGSRSYARRPIRPSSYRNPEATNSMP 861
Query: 466 *KIVSSRT 489
+ V+ RT
Sbjct: 862 DRHVARRT 869
>U42835-2|AAA83586.1| 617|Caenorhabditis elegans Chitinase protein
1 protein.
Length = 617
Score = 27.5 bits (58), Expect = 5.7
Identities = 14/45 (31%), Positives = 17/45 (37%)
Frame = +3
Query: 345 GEGDNCRDVIQCTASGIQAIRCPAGLFFDIEKQTCDWKDAVKNCK 479
G +C I+C CP GL F + CD D K K
Sbjct: 573 GVPSDCLKFIRCVNGISYNFECPNGLSFHADTMMCDRPDPSKCAK 617
>Z81550-4|CAB04477.1| 317|Caenorhabditis elegans Hypothetical
protein F55F3.3 protein.
Length = 317
Score = 26.6 bits (56), Expect = 9.9
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -3
Query: 74 RILIYYIAFFVFMIKMSIGSLSI 6
+I ++YI F++F+ IG LSI
Sbjct: 48 QITVFYIIFYIFLSAFFIGCLSI 70
>Z68302-5|CAA92633.2| 382|Caenorhabditis elegans Hypothetical
protein ZK792.2 protein.
Length = 382
Score = 26.6 bits (56), Expect = 9.9
Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Frame = +3
Query: 75 IRFKLVFTVI-LLYNVNAFGQFVTI 146
IR +V++VI +LY VNA QFV I
Sbjct: 179 IRMYMVYSVIKILYLVNAIAQFVII 203
>L14433-3|AAA27977.1| 2329|Caenorhabditis elegans Yeast prp
(splicing factor) relatedprotein 8 protein.
Length = 2329
Score = 26.6 bits (56), Expect = 9.9
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -1
Query: 415 AGQRIACIPEAVHWMTSRQLSPSP 344
A + +A VHW+ SR+ SP P
Sbjct: 795 AEEAVAIYTTTVHWLESRRFSPIP 818
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,802,070
Number of Sequences: 27780
Number of extensions: 216168
Number of successful extensions: 687
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -