Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15m21
         (568 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    58   9e-10
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po...    27   1.9  
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ...    27   2.5  
SPAC1687.17c |||Der1-like |Schizosaccharomyces pombe|chr 1|||Manual    26   4.4  
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar...    26   4.4  
SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    25   5.9  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    25   5.9  
SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch...    25   7.7  

>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 58.0 bits (134), Expect = 9e-10
 Identities = 29/65 (44%), Positives = 42/65 (64%)
 Frame = +3

Query: 324 NYPKKLVWRNIILFTYLHIAALYGGYLFLFHAKWQTDLFAYILYVMSGLGITAGAHRLWA 503
           N+ + L W + +L   L + A+YG  +F    + +T +FA I Y  SGLGITAG HRLW+
Sbjct: 57  NWWRHLNWLHCMLIFGLPMIAIYG--VFTTPLQTKTLIFAIIYYAYSGLGITAGYHRLWS 114

Query: 504 HKSYK 518
           H++YK
Sbjct: 115 HRAYK 119


>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +3

Query: 327 YPKKLVWRNIILFTYLHIAALYGGYLFLFHAKWQTDLFAYILYVM 461
           Y KKL W  I+ F Y H   +   Y+ L H     ++F+   Y++
Sbjct: 440 YTKKL-WSLIVNFEYTHAPLIPDAYMKLLHLYEFPNIFSKYDYIL 483


>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +2

Query: 278 YSRLRTVQHTCTASRQLPKETSLEEYNTFYIPSYCCVVWRLPF 406
           YSRL    H C  SR++  ET+ ++ N        C+ + L +
Sbjct: 329 YSRLLLFAHQCIPSREITFETTSKDGNLLNAIRIFCLYFDLDY 371


>SPAC1687.17c |||Der1-like |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
 Frame = +3

Query: 300 STPVQQADNYPKK--LVWRNIIL---FTYLHIAALYGGYLFLFHAKWQTDLF 440
           S+P  Q  ++ K   +VW ++++   F+Y+  AA Y  +  L+   W+  L+
Sbjct: 64  SSPPPQTQSFLKTVLIVWFSLLVTSYFSYMPFAASYFSFTMLYIWSWKHPLY 115


>SPBC19F5.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +3

Query: 369 YLHIAALYGGYLFLFHAKWQTDLFAYILYVMSGLGITAGAHRLWAH 506
           Y+ +A L   ++ LF     T L   IL +++ LGI A  +  +AH
Sbjct: 514 YILLACLILFFMTLFSRSSSTILPPSILLILTFLGIVASLYYCFAH 559


>SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 407

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +3

Query: 507 KSYKQSGLYVLSLSSSIPW 563
           KSYK +G YVL+  SS PW
Sbjct: 59  KSYK-NGEYVLAKMSSFPW 76


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 78  RLXINNTIFTYLASVLLFTNRRIDVICE*CIFFKRLINSYWY 203
           R  + N  FT   + L F N+ + VI   C+F  +   SY++
Sbjct: 663 RKYLANKYFTSNFAPLKFDNQALSVIIWVCVFTCKFAESYFF 704


>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 505

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = -2

Query: 297 TVLSLEYQHHFQREHHLHPLHWAPYWSVISRYTSSYLLTV*KKYTI 160
           +++S+     F R HHL+ LHW    S +  Y + ++L +   Y++
Sbjct: 336 SIISIIQTFIFDR-HHLYTLHWT---SEMGGYLAGFILVMFLLYSL 377


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,428,404
Number of Sequences: 5004
Number of extensions: 52984
Number of successful extensions: 127
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)