Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15m21
         (568 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0124 + 41212728-41212922,41215156-41215210,41215336-412171...    29   3.4  
05_05_0338 + 24204301-24206262,24206337-24206495,24206864-242070...    28   4.5  
01_01_0429 + 3254291-3254435,3254902-3255210,3255286-3256747,325...    28   4.5  
05_05_0219 + 23371561-23371680,23371799-23372207,23374520-233746...    28   6.0  
03_02_0422 - 8308711-8309100,8309197-8310724,8311394-8313411           28   6.0  
07_01_0233 - 1703602-1705623                                           27   7.9  

>01_07_0124 +
           41212728-41212922,41215156-41215210,41215336-41217128,
           41217363-41217521,41217883-41218054,41218173-41218471,
           41219060-41219368
          Length = 993

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 237 VKDANGVLFENDADTPDLGLSSTPVQQADNYPKKLVWRNII 359
           + D  G L        D  +   PV + DN+  K++WRNI+
Sbjct: 807 IMDTLGALALATEPPNDAMMKRPPVGRGDNFITKVMWRNIV 847


>05_05_0338 +
           24204301-24206262,24206337-24206495,24206864-24207035,
           24207544-24207842,24208301-24208355,24208438-24208487,
           24208522-24208827
          Length = 1000

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = +3

Query: 237 VKDANGVLFENDADTPDLGLSSTPVQQADNYPKKLVWRNII---LFTYLHIAAL 389
           + D  G L        D  +   PV++ DN+  +++WRNI+   L+  L +A L
Sbjct: 780 IMDTLGALALATEPPNDEMMKRPPVRRGDNFITRIMWRNILGQGLYQLLVLATL 833


>01_01_0429 +
           3254291-3254435,3254902-3255210,3255286-3256747,
           3256950-3257577
          Length = 847

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +3

Query: 423 WQTDLFAYILYVMSGLGITAG-AHRLWAHKS-YKQSGL 530
           WQ  L   +L++ SGLG T G    +W+  + YKQ  L
Sbjct: 613 WQDRLGVILLFIFSGLGFTVGFILAVWSSGAIYKQCAL 650


>05_05_0219 +
           23371561-23371680,23371799-23372207,23374520-23374635,
           23375385-23375855
          Length = 371

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 20/60 (33%), Positives = 28/60 (46%)
 Frame = +3

Query: 108 YLASVLLFTNRRIDVICE*CIFFKRLINSYWYSVK*QTNMAPNVKDANGVLFENDADTPD 287
           Y AS L+FT   + V+C  C F +R  +   Y    Q  M     +++GV  EN   T D
Sbjct: 266 YGASFLVFTVVLVGVVCACCKFARRRASGVPYQ---QLEMGDQAPNSSGV--ENTTSTVD 320


>03_02_0422 - 8308711-8309100,8309197-8310724,8311394-8313411
          Length = 1311

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 18/75 (24%), Positives = 36/75 (48%)
 Frame = -2

Query: 468  VLTLHTIYRQIGLFAISHEIRKGSLHTTQQYEGM*KVLYSSKLVSLGSCRLAVQVCWTVL 289
            VL++     +I +  +SH+ R+G      +   M ++ + + +  LG CR   ++   +L
Sbjct: 1037 VLSVSNSNSEIAVKRVSHDSRQGVKEFIAEVVSMGRLRHKNLVQLLGYCRRKGEL---LL 1093

Query: 288  SLEYQHHFQREHHLH 244
              EY  +   + HLH
Sbjct: 1094 VYEYMSNGSLDKHLH 1108


>07_01_0233 - 1703602-1705623
          Length = 673

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 8/104 (7%)
 Frame = -2

Query: 441 QIGLFAISHEIRKGSLHTTQQYEGM*KVLYSSKLVSLGSCRLAVQVCWTVLSLEYQHHFQ 262
           QI +  +SHE R+G      +   + ++ + + +  LG CR   ++   +L  EY  H  
Sbjct: 384 QIAVKRVSHESRQGIREFVAEIVSIGRLRHRNIVQLLGYCRRKDEL---ILVYEYMPHGS 440

Query: 261 REHHL-----HP-LHWAPYWSVISRYTSS--YLLTV*KKYTIHK 154
            + +L     HP L W   + +I    S   YL    +K  IH+
Sbjct: 441 LDKYLYCHSNHPTLDWIQRFRIIKGVASGLLYLHGDWEKVVIHR 484


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,676,555
Number of Sequences: 37544
Number of extensions: 297959
Number of successful extensions: 708
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)