Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15m21
         (568 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   3.7  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    22   4.9  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   4.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.6  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 307 LYSKPTTTQRN*FGGI*YFLHTFILL 384
           L+ +P++T+R     + + LH F LL
Sbjct: 265 LWLEPSSTERMIIANLNFILHLFCLL 290


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 248 CILYIGRHIGLL 213
           C L +GRH+G L
Sbjct: 216 CTLILGRHLGFL 227


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 341 SLEEYNTFYIPSYCC 385
           SL +YN   IP+ CC
Sbjct: 150 SLSDYNDKPIPASCC 164


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = -2

Query: 288 SLEYQHHFQREHH 250
           +L+  HH Q  HH
Sbjct: 137 TLQRHHHLQNHHH 149


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,680
Number of Sequences: 438
Number of extensions: 3343
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)