Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc15m17
(603 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81542-3|CAB04415.1| 308|Caenorhabditis elegans Hypothetical pr... 29 3.4
U41543-6|AAB37023.1| 2018|Caenorhabditis elegans Hypothetical pr... 28 4.5
AF067942-6|AAG45579.1| 345|Caenorhabditis elegans Hypothetical ... 28 5.9
Z81528-4|CAB04281.1| 575|Caenorhabditis elegans Hypothetical pr... 27 7.8
Z46241-8|CAA86316.2| 1784|Caenorhabditis elegans Hypothetical pr... 27 7.8
U37429-12|AAA79353.1| 274|Caenorhabditis elegans Alkylguanine d... 27 7.8
AL024499-5|CAC42318.1| 562|Caenorhabditis elegans Hypothetical ... 27 7.8
AF031840-1|AAC13676.1| 562|Caenorhabditis elegans GLY6c protein. 27 7.8
AF025469-6|AAR12979.1| 813|Caenorhabditis elegans Hypothetical ... 27 7.8
AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical ... 27 7.8
>Z81542-3|CAB04415.1| 308|Caenorhabditis elegans Hypothetical
protein F49A5.4 protein.
Length = 308
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -2
Query: 437 LVEGAQRGRQVSAFALETLNFVCGLARLTHD 345
+ G Q G+ SA ET++FVC L +D
Sbjct: 157 MTNGTQAGKWASASCTETMSFVCELPATIYD 187
>U41543-6|AAB37023.1| 2018|Caenorhabditis elegans Hypothetical protein
F46H5.4 protein.
Length = 2018
Score = 28.3 bits (60), Expect = 4.5
Identities = 31/158 (19%), Positives = 67/158 (42%), Gaps = 1/158 (0%)
Frame = +3
Query: 15 YDRFENVCFEAQLLRDEIDSLCFLFSKYFNQSLIVDGKGLTFFTEFN-KCIVSIKSSFEN 191
+++ N+C EA + +L F + +Q+L + KG F+E I K++F N
Sbjct: 1571 HEKQRNLC-EAAHSYLQASALVFEYIAQKDQNLSFESKGAATFSEITPNAIKESKTNF-N 1628
Query: 192 QANNTDNIHNVKNIFSIFLRDEFIKQVPQFRTIMQYLQTYYNPTPAPDVDEIMCQSCKPA 371
N D+ +++++ F IK + + +++ Q Y P + + K
Sbjct: 1629 SLKNADSENHIQSYH--FTEAGVIKILEKAFALLEKAQLYELLFPFSKIILKYYHATKSY 1686
Query: 372 NKIQCFECKCRYLASSLSTLDEGLQNGWDIFLRPMFGM 485
+++ + A + E +N D ++ P+ G+
Sbjct: 1687 SRVSHTHKRLGIAADQIKETGEYYENQSDAWISPLPGI 1724
>AF067942-6|AAG45579.1| 345|Caenorhabditis elegans Hypothetical
protein ZK6.4 protein.
Length = 345
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Frame = +1
Query: 7 LTRTTASKTCVLKRNCYEMKSI--RCVF 84
+TRTT K C L NC+ I +CVF
Sbjct: 36 ITRTTPVKKCYLGENCFTKTPITQKCVF 63
>Z81528-4|CAB04281.1| 575|Caenorhabditis elegans Hypothetical
protein F35E2.5 protein.
Length = 575
Score = 27.5 bits (58), Expect = 7.8
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Frame = -3
Query: 232 MFFTLCMLSVLLA*FSKLLFMETIHLLNSVKKVRPLPSTIK--LW--LKYFENKKHNESI 65
+F+ + +++++ KL E LN+ K + + + IK W L FEN + E I
Sbjct: 8 IFYFIFVIAIIPIVTEKLSLKENKERLNTCGKDKDIYNGIKNNRWHILAAFENGNNIEYI 67
Query: 64 SSRNNCASKHTFSKRSYVLN 5
SS + +++H + +LN
Sbjct: 68 SSASLISNRHFITSAFSILN 87
>Z46241-8|CAA86316.2| 1784|Caenorhabditis elegans Hypothetical protein
C38D4.3 protein.
Length = 1784
Score = 27.5 bits (58), Expect = 7.8
Identities = 19/62 (30%), Positives = 28/62 (45%)
Frame = +3
Query: 24 FENVCFEAQLLRDEIDSLCFLFSKYFNQSLIVDGKGLTFFTEFNKCIVSIKSSFENQANN 203
FEN FEA + E S L S + + DG+G + + +S+K FE + N
Sbjct: 891 FENEKFEA--MSSEAISSNKLLSAFLPGMIKKDGRGRQKTAKEQEIEISVKKMFERKVQN 948
Query: 204 TD 209
D
Sbjct: 949 DD 950
>U37429-12|AAA79353.1| 274|Caenorhabditis elegans Alkylguanine dna
alkyltransferaseprotein 2 protein.
Length = 274
Score = 27.5 bits (58), Expect = 7.8
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +3
Query: 219 NVKNIFSIFLRDEFIKQVPQFRTIMQYLQTYYNPTPAPDVDEIMCQSCK 365
NVK IF+ L+ + + V + Q +++Y+ +DE++ Q K
Sbjct: 50 NVKEIFNCILQTQPLPVVQPCHPVRQPRESFYSSHEHDPMDEVLLQEVK 98
>AL024499-5|CAC42318.1| 562|Caenorhabditis elegans Hypothetical
protein H38K22.5c protein.
Length = 562
Score = 27.5 bits (58), Expect = 7.8
Identities = 10/31 (32%), Positives = 13/31 (41%)
Frame = -1
Query: 483 CQTWVLKKCPNHFASPRRGCSARTPSICICT 391
C W L+ CP + G R P I C+
Sbjct: 487 CLAWTLRSCPTQTTAQPSGQVTRVPKITDCS 517
>AF031840-1|AAC13676.1| 562|Caenorhabditis elegans GLY6c protein.
Length = 562
Score = 27.5 bits (58), Expect = 7.8
Identities = 10/31 (32%), Positives = 13/31 (41%)
Frame = -1
Query: 483 CQTWVLKKCPNHFASPRRGCSARTPSICICT 391
C W L+ CP + G R P I C+
Sbjct: 487 CLAWTLRSCPTQTTAQPSGQVTRVPKITDCS 517
>AF025469-6|AAR12979.1| 813|Caenorhabditis elegans Hypothetical
protein W09B6.1b protein.
Length = 813
Score = 27.5 bits (58), Expect = 7.8
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 253 TSSSNKCPNLGPLCNTCKHITIRRRHPT 336
T +++ + +C+T KH+TIR PT
Sbjct: 496 TRGTSRTEAMNTMCSTLKHMTIRSSFPT 523
>AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical
protein W09B6.1a protein.
Length = 2054
Score = 27.5 bits (58), Expect = 7.8
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 253 TSSSNKCPNLGPLCNTCKHITIRRRHPT 336
T +++ + +C+T KH+TIR PT
Sbjct: 496 TRGTSRTEAMNTMCSTLKHMTIRSSFPT 523
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,896,033
Number of Sequences: 27780
Number of extensions: 300338
Number of successful extensions: 1013
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1011
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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