Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15m16
         (534 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|c...    33   0.035
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    30   0.25 
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce...    30   0.25 
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha...    29   0.33 
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    29   0.44 
SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr 2...    27   1.3  
SPBC3F6.01c |||serine/threonine protein phosphatase |Schizosacch...    26   3.1  
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    26   4.1  
SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase |Schizosac...    25   7.1  
SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr...    25   7.1  
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei...    25   7.1  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    25   9.4  

>SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 679

 Score = 32.7 bits (71), Expect = 0.035
 Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 6/109 (5%)
 Frame = +1

Query: 67  KFCQSSD-YERALKAAGKILQIAPNEQKAFHCKVVCFLQLHNFKEALATLTNAKNSALAA 243
           KF  S + Y+ AL  A + +  +P+E   + C    +L L +FK AL  L +        
Sbjct: 313 KFLISKERYDLALICAKRAVHASPSEFATWACLADVYLHLEDFKSALLALNSCPMYTYYE 372

Query: 244 DLLF-----EKAYTQYRLNSPKEALQTVDSAPELTPALKELRAQILYRL 375
              +      +A+  + +N PKE L+  ++A        E+    L RL
Sbjct: 373 RDAYPLPPSARAHLPFPVNFPKEELEVENNAQNGYTVSTEITDPYLARL 421


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 29.9 bits (64), Expect = 0.25
 Identities = 25/64 (39%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
 Frame = +1

Query: 223 KNSALAADL--LFEKAYTQYR-LNSPKEALQTVDSAPELTPALKELRAQILYRLEQ-YQD 390
           KN    A L  L +++Y  YR L S   AL +   APE    LK       +RL Q Y D
Sbjct: 179 KNECRIAALVPLVQESYGIYRFLTSMLRALYSTVDAPETLEPLKHRYKSQHHRLRQFYAD 238

Query: 391 CYNL 402
           C NL
Sbjct: 239 CSNL 242


>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 906

 Score = 29.9 bits (64), Expect = 0.25
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +1

Query: 70  FCQSSDYERALKAAGKILQIAPNEQKAFHCKVVCFLQLHN 189
           FCQ +D ERALK    +    P++Q+ +   + CF  L N
Sbjct: 743 FCQQNDIERALK---MVRVHGPDQQELYIMMLNCFASLEN 779


>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
           Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 697

 Score = 29.5 bits (63), Expect = 0.33
 Identities = 10/22 (45%), Positives = 19/22 (86%)
 Frame = +1

Query: 352 RAQILYRLEQYQDCYNLYRDLL 417
           +AQ+L +LE+YQ+  N+++DL+
Sbjct: 506 KAQVLEQLEKYQESLNIWKDLI 527


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 29.1 bits (62), Expect = 0.44
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +3

Query: 144 ESISLQSGMLSPTPQLQGGSSDINQCQE 227
           E++ L +G L P P+ + G SDIN+ +E
Sbjct: 901 EALDLINGFLQPNPERRLGFSDINEIKE 928


>SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 825

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 18/65 (27%), Positives = 30/65 (46%)
 Frame = -3

Query: 235 TLSSWHWLMSLEPP*SCGVGESIPLCNEMLSAHLVLSAVFSLQLLKLFHSHCSGKIYLIQ 56
           T +SWH    L+P  S  V   + L    +S   +   +   +LL LF S    ++ ++ 
Sbjct: 224 TATSWHAHKFLDPAESGAVIPVLELNGYKISERTIYGCMDDSELLSLF-SGFGYEVAIVN 282

Query: 55  DKPEQ 41
           D P+Q
Sbjct: 283 DTPDQ 287


>SPBC3F6.01c |||serine/threonine protein phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = +1

Query: 76  QSSDYERALKAAGKILQIAPNEQKAFHCKVVCFLQLHNFKEALATLTNA 222
           +S DY  A+  A K ++  P   KA+  +    + +   KEA+     A
Sbjct: 51  KSEDYGLAINDASKAIECDPEYAKAYFRRATAHIAIFQPKEAVGDFRKA 99


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -3

Query: 148 LSAHLVLSAVFSLQLLKLFHSHCSGKIYLIQDKPEQGYSPC 26
           L+  L++ A   L   K F S  S  + + +D  E+G+S C
Sbjct: 679 LAGSLLVGAFIQLACRKSFRSPVSAGVPIPKDVDEKGHSKC 719


>SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +1

Query: 97  ALKAAGKILQIAPNEQKAFHCKVVCFLQLHNFKEALATLTNAKNSALAA 243
           A++  GKI  +A  ++ A H K   F + H+  + L    N  +S +A+
Sbjct: 101 AIRGEGKIFVVAEGDKTAIHGKDTLFTK-HSVGDTLLLPNNYGSSHIAS 148


>SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 145 SAHLVLSAVFSLQLLKLFHSH 83
           + H+   A+  LQ+LKLFH H
Sbjct: 384 TVHVYSDAMRVLQVLKLFHQH 404


>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
           Vps41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 886

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 9/44 (20%), Positives = 24/44 (54%)
 Frame = +1

Query: 322 PELTPALKELRAQILYRLEQYQDCYNLYRDLLKNTTDEYEDERK 453
           P +  ++ +L A    +++ YQ CY L+++   +   +Y ++ +
Sbjct: 741 PHMKKSISKLLADHQSQVQLYQSCYKLFKNESISMAIKYREQEQ 784


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
 Frame = -3

Query: 166  PLCNEMLSAHLVLSAVFSLQLLKLFHSHCSGKIYLIQD---KPEQGYSPCWLTFF 11
            P+  E ++ H  +  +FSL+L++  HS  + KI+ I     K ++   PC+L  F
Sbjct: 1226 PIYKENVTIHTWMQ-LFSLKLMEYAHSQNAEKIFGICSKVVKDQEVNIPCFLLPF 1279


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.129    0.367 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,027,543
Number of Sequences: 5004
Number of extensions: 38051
Number of successful extensions: 130
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)