Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15m16
         (534 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80840-12|AAB37925.1|  694|Caenorhabditis elegans Hypothetical p...    88   3e-18
Z75526-7|CAE17729.1|  325|Caenorhabditis elegans Hypothetical pr...    37   0.008
Z73899-9|CAA98072.2|  905|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z11576-1|CAA77663.1|  625|Caenorhabditis elegans aromatic-L-amin...    29   2.8  
U80838-4|AAT48616.1|  648|Caenorhabditis elegans Hypothetical pr...    27   8.5  

>U80840-12|AAB37925.1|  694|Caenorhabditis elegans Hypothetical
           protein F08D12.1 protein.
          Length = 694

 Score = 88.2 bits (209), Expect = 3e-18
 Identities = 46/146 (31%), Positives = 81/146 (55%)
 Frame = +1

Query: 16  MSANKENNLVQAYLELNKFCQSSDYERALKAAGKILQIAPNEQKAFHCKVVCFLQLHNFK 195
           M+      L Q   ++++   S DY++AL +A K+++  P E  AF CK+V  +QL  + 
Sbjct: 1   MADASAGGLYQCLTDISRADTSGDYQKALTSANKLIRKYPKETFAFKCKLVAQIQLSQYA 60

Query: 196 EALATLTNAKNSALAADLLFEKAYTQYRLNSPKEALQTVDSAPELTPALKELRAQILYRL 375
           +AL  +       +   + FEKAY  YR +   EA++ +++  +      EL+AQ+ Y+ 
Sbjct: 61  DALELIRKTPAHQMG-HVGFEKAYIHYRQDELDEAIKELNTCDKDDVKALELKAQVFYKQ 119

Query: 376 EQYQDCYNLYRDLLKNTTDEYEDERK 453
           E YQ  Y++Y  LLKN +D+ ++ R+
Sbjct: 120 ENYQQAYDIYLYLLKNHSDDSDELRR 145


>Z75526-7|CAE17729.1|  325|Caenorhabditis elegans Hypothetical
           protein C06H2.7 protein.
          Length = 325

 Score = 37.1 bits (82), Expect = 0.008
 Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 1/101 (0%)
 Frame = +1

Query: 58  ELNKFCQSSDYERALKAAGKILQIAPNEQKAFHCKVVCFLQLHNFKEALATLTNAKNSAL 237
           E+ K    S+ +R    A  + Q   +   +  C  V  L +  F E +AT+ N K+  +
Sbjct: 159 EILKIFNKSNIQRVQLRAETVSQQTKDLINSLECMNV-ELNIGKFDEMVATVNNIKDLRI 217

Query: 238 AADLLFEKAYTQYRLNSPK-EALQTVDSAPELTPALKELRA 357
              LLF +  T +RLN  +  A  T  S P +   + E RA
Sbjct: 218 RQQLLFFQLITIFRLNIARINASVTAASLPLIVECINEWRA 258


>Z73899-9|CAA98072.2|  905|Caenorhabditis elegans Hypothetical
           protein ZK829.2 protein.
          Length = 905

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
 Frame = +1

Query: 163 VVCFLQLHN--FKEALATLTNAK-NSALAADLLFEKAYTQYRLNSPKEALQTVDSAPELT 333
           ++CF    N  F +AL    N   N +LA+ +L  K   +  +NSPK + + +DSA +L 
Sbjct: 740 LICFRAKSNDMFNKALLYRCNETGNVSLASCVLQNKFVIRMCINSPKCSEEDLDSAYKLI 799

Query: 334 PALKELRAQILYRLE 378
               ++     YR+E
Sbjct: 800 CNEYDILKPFQYRIE 814


>Z11576-1|CAA77663.1|  625|Caenorhabditis elegans aromatic-L-amino
           acid  decarboxylaseprotein.
          Length = 625

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
 Frame = +1

Query: 163 VVCFLQLHN--FKEALATLTNAK-NSALAADLLFEKAYTQYRLNSPKEALQTVDSAPELT 333
           ++CF    N  F +AL    N   N +LA+ +L  K   +  +NSPK + + +DSA +L 
Sbjct: 460 LICFRAKSNDMFNKALLYRCNETGNVSLASCVLQNKFVIRMCINSPKCSEEDLDSAYKLI 519

Query: 334 PALKELRAQILYRLE 378
               ++     YR+E
Sbjct: 520 CNEYDILKPFQYRIE 534


>U80838-4|AAT48616.1|  648|Caenorhabditis elegans Hypothetical
           protein F47F6.5 protein.
          Length = 648

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -3

Query: 469 QRPCWLSSH-LHTHQWCSSVDHGINCSSLGIALSGIKFEP 353
           +RP  +  H ++ H+  +  D  + C S G +LSG+  +P
Sbjct: 456 ERPSRVFCHYINNHEVETRADAVVRCESFGASLSGVDSDP 495


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.315    0.129    0.367 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,214,731
Number of Sequences: 27780
Number of extensions: 209699
Number of successful extensions: 605
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)