Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15m16
         (534 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    25   0.64 
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   4.5  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   4.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.9  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 24.6 bits (51), Expect = 0.64
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 340 LKELRAQILYRLEQYQDCYNLYRDLLKNTTD 432
           LKE   +I +++E  +DC   + DLL    +
Sbjct: 516 LKEKENEIDFKIEVTEDCNKSFNDLLTQVAE 546


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 67  KFCQSSDYERALKAAG 114
           +FCQ S Y++ L+  G
Sbjct: 76  EFCQDSGYDKILQVLG 91


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 67  KFCQSSDYERALKAAG 114
           +FCQ S Y++ L+  G
Sbjct: 76  EFCQDSGYDKILQVLG 91


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 9/38 (23%), Positives = 18/38 (47%)
 Frame = +1

Query: 292  KEALQTVDSAPELTPALKELRAQILYRLEQYQDCYNLY 405
            ++ L +    P+     ++ + Q   +L  Y D +NLY
Sbjct: 1440 RKTLTSAPQQPQQQQQQQQQQQQQQQQLNHYPDLHNLY 1477


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.315    0.129    0.367 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,777
Number of Sequences: 438
Number of extensions: 2538
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15090993
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)