Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15m13
         (612 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    29   0.40 
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1...    27   2.8  
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M...    26   4.9  
SPAC694.03 |||conserved fungal protein|Schizosaccharomyces pombe...    25   8.6  
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom...    25   8.6  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    25   8.6  

>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1150

 Score = 29.5 bits (63), Expect = 0.40
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = -3

Query: 388 QYYKSSCRRIKKSFFKYNGW-NEQLRFCRTEKFCSLVNLQLNKDGSKKLKRVQR 230
           ++YK+SC  IK S+ + +G+ N +  F   E  C L     +K  S  +K +Q+
Sbjct: 715 RFYKASCSEIKLSYIENSGFTNLEKSFLSEESHCGLE----SKTDSLVIKNIQK 764


>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
           complex subunit Tpr1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1039

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
 Frame = -3

Query: 586 RIRLSFEKCSKGIEVPLYEKLLLNHMM-----RINDDNLQWPSLMNNKKIMEWNANRGFD 422
           + R+ + K +    + LY++ L+++       RI      W   M    +  W   +  D
Sbjct: 181 KARILYAKGNYRSALKLYQRALVSNPQFKPDPRIGIGLCFWNLDMKTDALSAWTRVQQLD 240

Query: 421 ESNKILHVYIGQYY 380
             N ++  YIG YY
Sbjct: 241 PKNTVVDTYIGLYY 254


>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 468

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -3

Query: 376 SSCRRIKKSFFKYNGWNEQLRFCRTEKFCSLVNLQLNKDGSKKL 245
           S C R +KSF + N     +   R E   + +  QLN   SKKL
Sbjct: 138 SQCNRTRKSFVELNALQTSIDTIRNE--LNELRDQLNDSESKKL 179


>SPAC694.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 249

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
 Frame = +1

Query: 370 NCFYNIAQCKHAKF---CCSRQNR-GWRSIP*FFYYSSTMAIVNCRH 498
           NC  ++A CKHA F   C S  N+ G R       + + + I++C++
Sbjct: 95  NCTVSVAICKHALFVDKCRSISNKLGPREQVYLVGFDTLIRILDCKY 141


>SPCC132.01c ||SPCC1322.17c|DUF814 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1021

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = +3

Query: 474 DGHCKLSSFIRII*FNKSFSYS-GTSIPLE--HFSNDN 578
           DGH K+ S +R++ F+K   Y+ G    L+  +  NDN
Sbjct: 131 DGHYKILSLLRVVTFDKDQVYAVGQKYNLDKNNLVNDN 168


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1208

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -1

Query: 597  QPRNELDYRLKNVPKELK 544
            Q +NEL+ RLK + KEL+
Sbjct: 995  QDKNELEERLKEIQKELE 1012


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,504,044
Number of Sequences: 5004
Number of extensions: 51242
Number of successful extensions: 139
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)