Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15m13
         (612 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0413 + 13639476-13639537,13639702-13639783,13639865-136399...    32   0.31 
02_03_0220 + 16545571-16545573,16545717-16545818,16545980-165460...    29   3.8  
10_08_0136 - 15122420-15122469,15123845-15124334,15124822-151249...    28   6.7  
11_02_0083 - 8116997-8117590,8118342-8118745,8119073-8119671,812...    27   8.9  
03_05_1070 + 30125131-30127029                                         27   8.9  

>05_03_0413 +
           13639476-13639537,13639702-13639783,13639865-13639940,
           13640016-13640101,13640294-13640370,13641138-13641194,
           13641294-13641378,13642331-13642417,13642603-13642683,
           13643748-13643885,13643962-13644147,13644242-13644268
          Length = 347

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 18/61 (29%), Positives = 32/61 (52%)
 Frame = -3

Query: 436 NRGFDESNKILHVYIGQYYKSSCRRIKKSFFKYNGWNEQLRFCRTEKFCSLVNLQLNKDG 257
           ++ F    +  HV     Y  +CR+ KK++   + +++ L+     KFC L N+QL+K  
Sbjct: 106 DKNFTRGRRTTHVAAACLY-IACRQSKKAYLLID-FSDHLQISVFAKFCYLRNIQLSKSS 163

Query: 256 S 254
           S
Sbjct: 164 S 164


>02_03_0220 + 16545571-16545573,16545717-16545818,16545980-16546008,
            16549421-16553036
          Length = 1249

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 478  PSLMNNKKIMEWNANRGFDESNKILHVYIGQYYK 377
            P+LMN  ++ E+N   G  +S   L  YIG+  K
Sbjct: 1154 PALMNEYRVPEFNVRNGILKSLSFLFEYIGEMGK 1187


>10_08_0136 -
           15122420-15122469,15123845-15124334,15124822-15124935,
           15125022-15125303,15125422-15125591,15125670-15125757,
           15126128-15126173,15126254-15126336,15126595-15126694,
           15127002-15127081,15127200-15127283,15127373-15127531,
           15128617-15128772,15129634-15130197
          Length = 821

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +2

Query: 404 QNFVALVKTAVGVPFHNF 457
           QN V  +K++V +PFHNF
Sbjct: 642 QNMVDKIKSSVALPFHNF 659


>11_02_0083 -
           8116997-8117590,8118342-8118745,8119073-8119671,
           8120226-8120266
          Length = 545

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -3

Query: 334 GWNEQLRFC-RTEKFCSLVNLQLNKDGSKKLKRVQRKCD 221
           G  E + F  RT +   L+N++ NKDG   L +  R C+
Sbjct: 268 GQTEFVEFILRTPQLRKLINMRNNKDGQTALHQAVRMCN 306


>03_05_1070 + 30125131-30127029
          Length = 632

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 46  GGGRVRAPVRATGTQQDSLVRLD 114
           GGGR  A  R+T TQ   ++RLD
Sbjct: 522 GGGRGEAAWRSTATQDSQVLRLD 544


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,648,618
Number of Sequences: 37544
Number of extensions: 301409
Number of successful extensions: 765
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)