Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15m05
         (545 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    27   1.8  
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    26   3.2  
SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase Pmp1|...    26   4.2  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    25   5.5  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    25   5.5  
SPBC3B9.04 |||mitochondrial methyltransferase |Schizosaccharomyc...    25   7.3  
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    25   7.3  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    25   9.6  

>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = +2

Query: 83  CIAC-EYYTLRFHYDSVLSHVFSETHVHNLSCIMQS 187
           C  C E+YT R  ++    HV     V N+ C++ S
Sbjct: 153 CFDCHEWYTCRHCHNDACDHVLERPAVENMLCMICS 188


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
 Frame = +2

Query: 341 ILHLLDEKHLAML-----SDDLYLKMKATSPNGQ-IPEEWGPKDLSWSKYLASVG 487
           ILHL+++  L +      +DD  +K    S N Q   EE+G     W +YLASVG
Sbjct: 719 ILHLVEQNCLLIFDLHNGTDDTIVK----SHNFQKFEEEFGNSRKEWLQYLASVG 769


>SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase
           Pmp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 278

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 494 PVCPRWPNTWTSSSPLVPILQEF 426
           PVC   PN +  + P +PI+Q F
Sbjct: 61  PVCIYPPNIYLYAKPTMPIIQSF 83


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +2

Query: 311 KQNIETAEATILHLLDEKHLAMLSDDLYLKMKATSPNGQIP 433
           + ++ +A+      L+   LAML   +       SPNGQ+P
Sbjct: 416 QSHVPSAKVPPTSKLNHAQLAMLKSQIVAYNCLNSPNGQVP 456


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 172 GQVVDVSFAEHVTENAIVVESERVV 98
           G VVD  F EH+ E  I  ++ RVV
Sbjct: 466 GNVVDKFFLEHLCETTIESDAMRVV 490


>SPBC3B9.04 |||mitochondrial methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 248

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/46 (23%), Positives = 23/46 (50%)
 Frame = +2

Query: 110 RFHYDSVLSHVFSETHVHNLSCIMQSDKHIPFLMSETTIESIKEMN 247
           ++ + + + + ++E+H  +  C+   D       SE TI+S K  N
Sbjct: 193 KYKFLNRILNAYAESHYESWGCVWNRDIEQLLEDSELTIDSCKRFN 238


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1136

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 5/93 (5%)
 Frame = +2

Query: 179 MQSDKHIPFLMSETTIESIKEMNAKFLSGHNITATASGLN-----CRLCKQNIETAEATI 343
           +  D+ IP+++S+  + S +   +KFL    I A  S LN     C L     E+     
Sbjct: 336 LPDDEFIPWMLSDFQLISSEGSQSKFLL---IIAWKSNLNTVIQKCNLSLDQDESFSCVW 392

Query: 344 LHLLDEKHLAMLSDDLYLKMKATSPNGQIPEEW 442
            H LD      L +  +  +     +G I E W
Sbjct: 393 SHSLDS---FSLIEKTFFDVPTNMSSGDISEIW 422


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1471

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +2

Query: 125 SVLSHVFSETHVHNLSCIMQSDKHIPFLMSETTIES 232
           S L    S T+VH + CI  +++ +P+  S   + S
Sbjct: 629 SQLMTTVSSTNVHYIRCIKPNEEKLPWTFSPPMVLS 664


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,134,888
Number of Sequences: 5004
Number of extensions: 41915
Number of successful extensions: 148
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)