Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc15m05
(545 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0028 - 25746250-25746526,25746839-25746975,25747089-257472... 31 0.60
01_06_1249 - 35714645-35716003,35716700-35716761,35717007-357171... 30 1.4
11_06_0696 + 26358713-26359779,26359826-26360110,26360177-263603... 29 1.8
04_01_0492 + 6476586-6476873,6477414-6477686,6477769-6477948,647... 29 2.4
10_08_0509 + 18419815-18422150,18422249-18422291,18423154-184234... 27 7.4
09_04_0155 - 15185985-15186755,15187049-15187236,15187479-151875... 27 7.4
06_03_1407 - 29954374-29954738,29955939-29958558 27 7.4
05_04_0280 - 19752112-19752451,19754104-19755587 27 7.4
01_05_0271 + 20276965-20278674 27 7.4
10_08_0495 - 18318028-18320399,18322450-18322981,18323097-183232... 27 9.8
>01_06_0028 -
25746250-25746526,25746839-25746975,25747089-25747292,
25747747-25747855,25747951-25748081,25748156-25748253,
25748827-25749018,25749075-25749177,25749275-25749445
Length = 473
Score = 31.1 bits (67), Expect = 0.60
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Frame = +2
Query: 122 DSVLSHVFSETHVHNLSCIMQSDK-HIPFLMSETTIESIKEMNAKFLSGHNITATASGLN 298
++V +H + E V+ L ++ + + HI + T + +KEMNAK + I +T
Sbjct: 80 NNVWAHCYDELAVYRLIPLLVTLRAHIYY--KSTMVSILKEMNAKLSTAKEIKSTHRISE 137
Query: 299 CRLCKQNIETAEATILHL-LDEKHLAMLSDDLYLK 400
+C+Q+ + L + L++ ML+D LK
Sbjct: 138 VLMCQQSCLYMKTAKLEVGLNKDFRKMLTDHADLK 172
>01_06_1249 -
35714645-35716003,35716700-35716761,35717007-35717181,
35717276-35717301,35717917-35717983,35719803-35719945,
35720337-35720349
Length = 614
Score = 29.9 bits (64), Expect = 1.4
Identities = 20/57 (35%), Positives = 28/57 (49%)
Frame = +2
Query: 230 SIKEMNAKFLSGHNITATASGLNCRLCKQNIETAEATILHLLDEKHLAMLSDDLYLK 400
+I E+ K + A A L+ CKQ +ET+ ATI LL + M S L +K
Sbjct: 301 TIDELRVKLKASEEAEAQARALH-EECKQQLETSRATIDSLLTDGSKLMDSFSLVVK 356
>11_06_0696 +
26358713-26359779,26359826-26360110,26360177-26360356,
26360516-26360585,26361051-26361950
Length = 833
Score = 29.5 bits (63), Expect = 1.8
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Frame = +2
Query: 257 LSGHNITATASGLNCRLCKQNIETAE--ATILHLLDEKHLAMLSDDLYLKMKATSPNGQI 430
+S + SGL+ C NI A + L++K + DD++LK+ T NG
Sbjct: 95 MSSSRKSTACSGLSLSSCFSNIRIRHEVAVKIRSLNKKIDNISKDDVFLKLSLTQHNGS- 153
Query: 431 PEEWGPKDLSWSKYLASVGKPV 496
W P + S VGK V
Sbjct: 154 GSAWTPIESSSLVEPNLVGKEV 175
>04_01_0492 +
6476586-6476873,6477414-6477686,6477769-6477948,
6478436-6478696,6479171-6479303,6479404-6479494,
6479921-6480023,6480557-6480660,6480809-6480902,
6480985-6481140,6481224-6481286,6481388-6481453,
6481670-6481870,6481999-6482076,6482165-6482284,
6482382-6482462,6482548-6482633,6482920-6483031,
6483093-6483170,6483306-6483482
Length = 914
Score = 29.1 bits (62), Expect = 2.4
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
Frame = -3
Query: 474 KYLDQLKSF--GPHSSGICPFGLVAFIFKY-KSSESMAKCFSSNKWSMVASA----VSMF 316
KY+D + SF G H SGI PFG + + Y E FS++ S +A + +
Sbjct: 286 KYVDIVGSFQTGYHISGIAPFGDLLVVLAYIPEEEDRENSFSNSVPSRQGTAQRPEIHLV 345
Query: 315 CLQSRQLSPDAVAV 274
++ +L+ DA+ +
Sbjct: 346 SWKNDELTTDALPI 359
>10_08_0509 +
18419815-18422150,18422249-18422291,18423154-18423487,
18423766-18423878,18424461-18424589,18424771-18424864,
18424967-18425050,18425859-18426047,18426897-18427017,
18427476-18427692
Length = 1219
Score = 27.5 bits (58), Expect = 7.4
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 7/64 (10%)
Frame = +2
Query: 206 LMSETTIES--IKEMNAKFLS--GHNITATASGLNC---RLCKQNIETAEATILHLLDEK 364
LM+E IE ++E++ FLS + TA + LN +L ++ T T L ++DEK
Sbjct: 694 LMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRAGTYLFMIDEK 753
Query: 365 HLAM 376
H ++
Sbjct: 754 HFSL 757
>09_04_0155 -
15185985-15186755,15187049-15187236,15187479-15187517,
15187741-15187768
Length = 341
Score = 27.5 bits (58), Expect = 7.4
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +2
Query: 293 LNCRLCKQNIETAEATILHLLDEKHLAMLSDDLYLKMKAT 412
L+C +CK + + H +KH A L L K+ AT
Sbjct: 301 LSCEICKLQCNSEKVLSDHRYGKKHQAKLEKVLQAKLNAT 340
>06_03_1407 - 29954374-29954738,29955939-29958558
Length = 994
Score = 27.5 bits (58), Expect = 7.4
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -1
Query: 467 WTSSSPLVPILQEFARSGSSLSFLSTNR-LRAWLSVSRLISGVWSL 333
W S LV ++ FA +++FL + AW S +R SG W +
Sbjct: 644 WDSKKMLVALVAAFA--AVAVAFLGARKGCSAWRSAARRRSGAWKM 687
>05_04_0280 - 19752112-19752451,19754104-19755587
Length = 607
Score = 27.5 bits (58), Expect = 7.4
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -1
Query: 494 PVCPRWPNTWTSSSPLVPILQEFARS 417
P RWP++W SP P L FA S
Sbjct: 45 PAAARWPSSW---SPAAPPLHSFAAS 67
>01_05_0271 + 20276965-20278674
Length = 569
Score = 27.5 bits (58), Expect = 7.4
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 534 LIKFSMITWSRLLTGLPTLAKYLDQLKSF 448
L+ ++TWS L+TGL + KY + F
Sbjct: 281 LLDADLVTWSSLITGLLHICKYEESFGLF 309
>10_08_0495 - 18318028-18320399,18322450-18322981,18323097-18323200,
18323653-18323701,18323979-18324119,18324889-18324957,
18325048-18325137,18325301-18326251,18326831-18327502
Length = 1659
Score = 27.1 bits (57), Expect = 9.8
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 7/64 (10%)
Frame = +2
Query: 206 LMSETTIE--SIKEMNAKFLS--GHNITATASGLNC---RLCKQNIETAEATILHLLDEK 364
LM+E IE S++E++ FLS + +A + LN +L ++ T T L ++DEK
Sbjct: 1573 LMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKLLQRGDITRAGTYLFMIDEK 1632
Query: 365 HLAM 376
H ++
Sbjct: 1633 HFSL 1636
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,120,646
Number of Sequences: 37544
Number of extensions: 277762
Number of successful extensions: 908
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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