Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15m05
         (545 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024806-2|AAK84613.1|  433|Caenorhabditis elegans Hypothetical ...    30   0.95 
Z79695-2|CAB01971.2| 1008|Caenorhabditis elegans Hypothetical pr...    29   1.7  
U41534-6|AAB47598.1|  375|Caenorhabditis elegans Hypothetical pr...    29   1.7  
AL032631-14|CAA21578.1|  243|Caenorhabditis elegans Hypothetical...    29   2.9  
Z46381-1|CAA86513.1|  437|Caenorhabditis elegans Hypothetical pr...    27   8.8  
U40954-8|AAM69083.2|  471|Caenorhabditis elegans Hypothetical pr...    27   8.8  
AF082012-1|AAD03024.1|  437|Caenorhabditis elegans UDP-N-acetylg...    27   8.8  

>AC024806-2|AAK84613.1|  433|Caenorhabditis elegans Hypothetical
           protein Y52E8A.4 protein.
          Length = 433

 Score = 30.3 bits (65), Expect = 0.95
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -3

Query: 357 SNKWSMVASAVSMFCLQSRQLSPDAVAVML 268
           S KW+MV   V+ FC+Q+  + P+   +M+
Sbjct: 78  SGKWAMVLGMVAAFCMQAAYMFPNRYILMV 107


>Z79695-2|CAB01971.2| 1008|Caenorhabditis elegans Hypothetical
           protein F27D4.6 protein.
          Length = 1008

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
 Frame = +2

Query: 80  FCIACEYYTLRF-HYDSVLSHVFSETHVHNLSCIMQSDKHIPFLMSETTIESIKEMNAKF 256
           FC+      +R  +  S + H+FS  H  N+ C+  S   + F  S  T+   KE+    
Sbjct: 607 FCVNLHSNQIRMGNMSSAIRHIFSFDHRQNMGCV-ASSSDLNFWKSFLTVAVTKEIPVIT 665

Query: 257 LSGHNITATASGLNCR 304
               N T++    N +
Sbjct: 666 PQVQNTTSSPIAQNVK 681


>U41534-6|AAB47598.1|  375|Caenorhabditis elegans Hypothetical
           protein C16A3.4 protein.
          Length = 375

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 2/103 (1%)
 Frame = +2

Query: 65  GKLAFFCIACE--YYTLRFHYDSVLSHVFSETHVHNLSCIMQSDKHIPFLMSETTIESIK 238
           G   F C+ C   + T     D    H  +E H +NL    +    +P +  E   E   
Sbjct: 3   GSTGFTCVTCRVVFETAELQRD----HYKTEWHRYNLK---RQAAELPAIGIELFNEKAA 55

Query: 239 EMNAKFLSGHNITATASGLNCRLCKQNIETAEATILHLLDEKH 367
             N    +   + A+   L C+ C+++I++  A   H+  +KH
Sbjct: 56  SFNP---TKPVVAASVEPLYCKACRKSIKSENAMTDHVASKKH 95


>AL032631-14|CAA21578.1|  243|Caenorhabditis elegans Hypothetical
           protein Y106G6H.15 protein.
          Length = 243

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +2

Query: 296 NCRLCKQNIETAEATILHLLDE-KHLAMLSDD 388
           N R+C++NI   E TI  LL+  K++ +L DD
Sbjct: 15  NFRICRENIPNFETTISPLLNTMKNIKLLLDD 46


>Z46381-1|CAA86513.1|  437|Caenorhabditis elegans Hypothetical
           protein M01F1.1 protein.
          Length = 437

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 98  YYTLRFHYDSVLSHVFSETHVHNLSCIMQSDKHI 199
           YY +  HY   L+H+FS ++ ++   I + D  I
Sbjct: 168 YYYISRHYKLALNHIFSNSNNYSSVIITEDDLDI 201


>U40954-8|AAM69083.2|  471|Caenorhabditis elegans Hypothetical
           protein ZK813.5 protein.
          Length = 471

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 77  FFCIACEYYTLRFHYDSVLSHVFSETHV 160
           F CI   Y T+ F Y+S  S  FSE  +
Sbjct: 258 FLCIEGPYITMCFFYESYNSREFSEVSI 285


>AF082012-1|AAD03024.1|  437|Caenorhabditis elegans
           UDP-N-acetylglucosamine:a-3-D-mannosideb-1,
           2-N-acetylglucosaminyltransferase I protein.
          Length = 437

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 98  YYTLRFHYDSVLSHVFSETHVHNLSCIMQSDKHI 199
           YY +  HY   L+H+FS ++ ++   I + D  I
Sbjct: 168 YYYISRHYKLALNHIFSNSNNYSSVIITEDDLDI 201


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,971,874
Number of Sequences: 27780
Number of extensions: 243289
Number of successful extensions: 818
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)