Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15m05
         (545 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   4.7  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              21   8.2  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   8.2  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    21   8.2  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +2

Query: 386 DLYLKMKATSPNGQIPEEWGPKDLSWS 466
           D+ LK +  + N  + +EW    L W+
Sbjct: 59  DVNLKNQIMTTNVWVEQEWNDYKLKWN 85


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +3

Query: 138 TCSAKLTSTTCPVLCN 185
           TCS  ++ T C   CN
Sbjct: 59  TCSGDISVTKCEGFCN 74


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = +2

Query: 131 LSHVFSETHVHNLSCIMQSDKHIPFLMSE 217
           +SH   E H+  L  + + D  +P  + E
Sbjct: 95  VSHTCIENHLKQLGYVQKLDTWVPHELKE 123


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +3

Query: 138 TCSAKLTSTTCPVLCN 185
           TCS  ++ T C   CN
Sbjct: 59  TCSGDISVTKCEGFCN 74


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,879
Number of Sequences: 438
Number of extensions: 2738
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)