Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15m02
         (580 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    28   1.1  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    28   1.1  
SPAC31G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   4.6  
SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces pom...    25   6.1  

>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = -1

Query: 559 KRKLVTCKINDFFPFLHPLKFVVLQNPLRDHLSVHLQRESYYLD*QPLRHYQNPYF 392
           K  L   +I D F  L P +FV + +PL   L+  +    + +  + L  + N YF
Sbjct: 480 KELLFLNEIEDIFEVLEPSEFVNIMSPLFQQLARSISSMHFQVAERALCLWSNEYF 535


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +1

Query: 343 KMEHNLDD-SLNLEGSIESMDFDNAGVVVSQDNMT 444
           K+   L D S+N  G I   DFDN+  + S+ +++
Sbjct: 632 KLTRRLSDLSVNSSGQISKQDFDNSNSIFSESSLS 666


>SPAC31G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 234

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
 Frame = -1

Query: 493 VLQNPLRDHLSVHLQRESYYLD*QPLRHYQNPYFLCFL-LSLMNHL 359
           +L +PLR  L+ H       L   P R   NP   C L L   NHL
Sbjct: 16  ILSSPLRQDLATHFLFPRELLAKFPARKDTNPRKFCLLPLEGKNHL 61


>SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 264

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 10/33 (30%), Positives = 22/33 (66%)
 Frame = +1

Query: 343 KMEHNLDDSLNLEGSIESMDFDNAGVVVSQDNM 441
           K EH  DD+++LE  +E ++ +N  +V + +++
Sbjct: 100 KTEHLSDDNVSLEKRVEYLETENTKLVKTLNSL 132


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,273,150
Number of Sequences: 5004
Number of extensions: 43880
Number of successful extensions: 93
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)