Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15m02
         (580 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23529-9|AAL32210.1|  713|Caenorhabditis elegans G-protein-linke...    30   1.0  
AF117300-1|AAF26201.1|  713|Caenorhabditis elegans G protein-lin...    30   1.0  
U58729-3|AAM54204.1|  955|Caenorhabditis elegans Hypothetical pr...    28   5.5  
U58729-2|AAM54203.1|  913|Caenorhabditis elegans Hypothetical pr...    28   5.5  
U58729-1|AAM54202.1|  928|Caenorhabditis elegans Hypothetical pr...    28   5.5  
AF456360-1|AAL60231.1|  928|Caenorhabditis elegans immunoglobuli...    28   5.5  

>U23529-9|AAL32210.1|  713|Caenorhabditis elegans G-protein-linked
           acetylcholinereceptor protein 1, isoform b protein.
          Length = 713

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 13/40 (32%), Positives = 26/40 (65%)
 Frame = +1

Query: 340 FKMEHNLDDSLNLEGSIESMDFDNAGVVVSQDNMTLSANE 459
           F+++ N +++LN+EGS+ + +  N GV+  + +  LS  E
Sbjct: 292 FRVDPNSNNNLNVEGSLNTENDQNLGVIEEERSGFLSRRE 331


>AF117300-1|AAF26201.1|  713|Caenorhabditis elegans G protein-linked
           acetylcholinereceptor GAR-1a protein.
          Length = 713

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 13/40 (32%), Positives = 26/40 (65%)
 Frame = +1

Query: 340 FKMEHNLDDSLNLEGSIESMDFDNAGVVVSQDNMTLSANE 459
           F+++ N +++LN+EGS+ + +  N GV+  + +  LS  E
Sbjct: 292 FRVDPNSNNNLNVEGSLNTENDQNLGVIEEERSGFLSRRE 331


>U58729-3|AAM54204.1|  955|Caenorhabditis elegans Hypothetical
           protein F02G3.1c protein.
          Length = 955

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 14/44 (31%), Positives = 28/44 (63%)
 Frame = +1

Query: 349 EHNLDDSLNLEGSIESMDFDNAGVVVSQDNMTLSANEHSGDLSM 480
           +HN+++ L +   IES++ ++AG      N T+ +NE + DL++
Sbjct: 290 KHNVEEGLLI---IESLNSEDAGTYKCVANNTVGSNERTFDLAV 330


>U58729-2|AAM54203.1|  913|Caenorhabditis elegans Hypothetical
           protein F02G3.1b protein.
          Length = 913

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 14/44 (31%), Positives = 28/44 (63%)
 Frame = +1

Query: 349 EHNLDDSLNLEGSIESMDFDNAGVVVSQDNMTLSANEHSGDLSM 480
           +HN+++ L +   IES++ ++AG      N T+ +NE + DL++
Sbjct: 263 KHNVEEGLLI---IESLNSEDAGTYKCVANNTVGSNERTFDLAV 303


>U58729-1|AAM54202.1|  928|Caenorhabditis elegans Hypothetical
           protein F02G3.1a protein.
          Length = 928

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 14/44 (31%), Positives = 28/44 (63%)
 Frame = +1

Query: 349 EHNLDDSLNLEGSIESMDFDNAGVVVSQDNMTLSANEHSGDLSM 480
           +HN+++ L +   IES++ ++AG      N T+ +NE + DL++
Sbjct: 263 KHNVEEGLLI---IESLNSEDAGTYKCVANNTVGSNERTFDLAV 303


>AF456360-1|AAL60231.1|  928|Caenorhabditis elegans immunoglobulin
           domain-containingprotein F02G3.1 protein.
          Length = 928

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 14/44 (31%), Positives = 28/44 (63%)
 Frame = +1

Query: 349 EHNLDDSLNLEGSIESMDFDNAGVVVSQDNMTLSANEHSGDLSM 480
           +HN+++ L +   IES++ ++AG      N T+ +NE + DL++
Sbjct: 263 KHNVEEGLLI---IESLNSEDAGTYKCVANNTVGSNERTFDLAV 303


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,287,074
Number of Sequences: 27780
Number of extensions: 237404
Number of successful extensions: 499
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)