Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15m02
         (580 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    22   5.0  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   5.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   6.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   8.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   8.8  

>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = +2

Query: 110 KQSACSFITHISNKCMYC 163
           K   CS +    N+C YC
Sbjct: 57  KNQQCSILRINRNRCQYC 74


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = +2

Query: 110 KQSACSFITHISNKCMYC 163
           K   CS +    N+C YC
Sbjct: 106 KNQQCSILRINRNRCQYC 123


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 12/50 (24%), Positives = 20/50 (40%)
 Frame = +1

Query: 349  EHNLDDSLNLEGSIESMDFDNAGVVVSQDNMTLSANEHSGDLSMDFEEQQ 498
            E +  DS  L+ S    +  N G    +D  TL++           ++QQ
Sbjct: 1411 EDSTRDSTKLDRSSREREVHNGGQQEDRDRKTLTSAPQQPQQQQQQQQQQ 1460


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -3

Query: 212  WTEVSRIATVKNKFRIHNTYIYLIYE**MNTHFV 111
            WT VS    ++ +F + N     +Y+  + TH V
Sbjct: 1544 WTLVSNSVKMQRRFVVTNLQPSSVYQLKVETHNV 1577


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -3

Query: 212  WTEVSRIATVKNKFRIHNTYIYLIYE**MNTHFV 111
            WT VS    ++ +F + N     +Y+  + TH V
Sbjct: 1540 WTLVSNSVKMQRRFVVTNLQPSSVYQLKVETHNV 1573


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,275
Number of Sequences: 438
Number of extensions: 2920
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)