Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15m01
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    31   0.077
SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1||...    27   1.3  
SPAC22A12.14c |||BSD domain protein, unknown biological role|Sch...    27   1.7  
SPBC18E5.10 |||iron sulfur cluster assembly protein |Schizosacch...    26   2.9  
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    26   2.9  
SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz...    26   3.8  
SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyce...    25   5.1  
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy...    25   5.1  
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|...    25   6.7  
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    25   6.7  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    25   8.9  
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb...    25   8.9  

>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2100

 Score = 31.5 bits (68), Expect = 0.077
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = -1

Query: 186 IRQLLRLYWCCHFFPRIRHDYLVLIRIKTNVKQFINKLVEYFFLKLSS 43
           +++ L   WC  FF   +    V +RI+    QF+   +   +LK SS
Sbjct: 465 VQESLAFQWCSDFFSNFKEHKFVFVRIERTNPQFLFAFLRSLWLKDSS 512


>SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 393

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +2

Query: 59  KKYSTSLFINCLTLVFILIKTR*SCRILGKK 151
           KKY TS+   C  + ++ ++TR  CR++ KK
Sbjct: 184 KKYKTSILEICNEM-YVHLRTRFECRVMKKK 213


>SPAC22A12.14c |||BSD domain protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 347

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 33/133 (24%), Positives = 59/133 (44%), Gaps = 9/133 (6%)
 Frame = +1

Query: 145 KKVAAPVEAQKLSDIMSEEFA-RDLQVREEIKFAEHLSEHHVGTSNEVPVE--LLQEI-- 309
           K+V  P++A +  +   E F+  D +  EE    E +++    +S E   E     E+  
Sbjct: 215 KEVVQPIKAIQSGNDEEEIFSWGDERSDEEESDNEQVNDEKKQSSEEDTTENNSAAEVID 274

Query: 310 ESCNAKEYCDSDAIIAKVLQCQFDREHDDEIKRVEKKR---NGDAKVSVSYDNYRNVPSH 480
           E+ N  E   S  +  +      D E D E+K  E+ +   + + + S S    ++  + 
Sbjct: 275 ETVNDLESAVSKGLQIETQPASHDGEVDGEVKEEEENKVSSSSNIEASQSSLEVKDEANR 334

Query: 481 LIYDS-EDDDDFE 516
            + D  EDDDD+E
Sbjct: 335 KVDDDDEDDDDWE 347


>SPBC18E5.10 |||iron sulfur cluster assembly protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = -1

Query: 258 LREMFCKFYLFSNLKVSCKF---FRHDIRQLLR 169
           L++MF KF + S+ KV C F    RH I  + R
Sbjct: 407 LKDMFSKFNMPSSSKVFCGFGDSMRHQIHSIQR 439


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +2

Query: 317 ATQRNIVTLTRLLQKFCNVSSTENTMTKSNA*RKNVMEMLKYPFPMIITA 466
           A + N  T T   Q     +  +NTM K +A R +V   L  P P + +A
Sbjct: 447 AAKPNSPTSTFFPQSSFGQTIAKNTMDKPSAVRTSVPSQLAAPIPQVASA 496


>SPBC646.09c |int6|yin6|translation initiation factor
           eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = -1

Query: 309 YFL*QLNWNFIRGTDMVLREMFCKFYLFSNLKVSCKFFRHDIRQLLRL 166
           +FL  L  +F+ G   +L E +C+ +   ++ V       D  QL++L
Sbjct: 343 FFLVSLCDHFLEGARKLLAEAYCRIHSVISVDVLANKLEMDSAQLIQL 390


>SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +1

Query: 379 DREHDDEIKRVEKKRNGDAKVSVSYDNYRNVPSHLIYDSEDDDDFE 516
           D+ +    K +E    G+ K +   D+   +PS  + +SEDD  FE
Sbjct: 440 DKGNSSPFKPLELNVVGEKKANAEVDS---LPSENVQESEDDKAFE 482


>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 606

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 24/102 (23%), Positives = 39/102 (38%)
 Frame = +1

Query: 145 KKVAAPVEAQKLSDIMSEEFARDLQVREEIKFAEHLSEHHVGTSNEVPVELLQEIESCNA 324
           KK+A P + +  +    +E       R E + ++   E      NE    L QEI S   
Sbjct: 506 KKLARPAKIKNEAWSKQKEVKEKRNTRREKRKSK--KEFLKAQKNEASNNLKQEIVSKAG 563

Query: 325 KEYCDSDAIIAKVLQCQFDREHDDEIKRVEKKRNGDAKVSVS 450
            +  ++D +I +      + E D    +  KKR   A    S
Sbjct: 564 AQETENDDLIDEESDALSELEEDYRQLKKSKKRKNQASFGFS 605


>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 14/52 (26%), Positives = 21/52 (40%)
 Frame = +1

Query: 361 VLQCQFDREHDDEIKRVEKKRNGDAKVSVSYDNYRNVPSHLIYDSEDDDDFE 516
           VL+   D E +DE    EK+   + K      NY      + +  ED +  E
Sbjct: 262 VLEEDDDDEDEDEELEGEKEEEEEEKEKPEISNYDETEGKVNFSLEDSESLE 313


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +1

Query: 397 EIKRVEKKRNGDAKVSVSYDNYRNVPSHLI 486
           E+K++    + D  V   + NY+N+   LI
Sbjct: 373 EVKKISDSASSDKDVKQLFSNYKNIYGDLI 402


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 439  VSVSYDNYRNVPSHLIYDS 495
            V +SYD Y NVP+ L  DS
Sbjct: 1850 VQISYDIYPNVPALLAGDS 1868


>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 983

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 400 IKRVEKKRNGDAKVSVSYDNYRNVPSHLIYDSED 501
           +  VE+  NGDA +    D+Y  V  +L   SE+
Sbjct: 891 LSEVEEDANGDATIYYKNDDYSAVGFYLDETSEE 924


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,927,038
Number of Sequences: 5004
Number of extensions: 38131
Number of successful extensions: 141
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)