Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc15m01
(516 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0023 + 3076899-3077066,3077144-3077203,3077561-3077686,307... 32 0.31
03_05_0175 + 21513767-21513903,21534361-21535385,21537375-215375... 31 0.73
08_02_1247 + 25578291-25578305,25579084-25579197,25579497-255796... 26 1.6
04_03_0675 - 18571495-18572055,18572465-18572966,18573774-185738... 29 2.9
03_05_0817 - 27939192-27939584,27940806-27941561 29 2.9
01_01_0335 - 2706916-2706984,2707062-2707825,2710014-2710053,271... 29 2.9
09_04_0141 + 15036249-15036339,15036834-15037768,15037968-15038081 28 5.1
05_07_0268 + 28830373-28830435,28830632-28830736,28831055-28831975 28 5.1
01_06_0847 + 32411521-32411619,32411737-32411851,32412292-324123... 28 5.1
12_02_0641 + 21450262-21450603,21450691-21450963,21451600-214518... 27 6.8
12_02_0638 + 21439600-21439941,21440029-21440301,21440938-214412... 27 6.8
11_04_0364 - 16791774-16792490,16792545-16793561,16793856-167939... 27 6.8
09_04_0308 + 16567361-16568854,16568946-16569068,16569372-165696... 27 6.8
03_06_0638 + 35222994-35223265,35223521-35223610,35224189-352243... 27 6.8
01_06_0848 + 32426550-32426613,32427013-32427167,32428470-324285... 27 6.8
05_05_0252 - 23621592-23621912,23621958-23622317,23622979-236230... 27 8.9
>09_02_0023 +
3076899-3077066,3077144-3077203,3077561-3077686,
3077757-3077903,3077940-3078431
Length = 330
Score = 31.9 bits (69), Expect = 0.31
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Frame = +1
Query: 145 KKVAAPVEAQKLS---DIMSEEFARDLQVREEIKFAEHLSEHHVGTSNEVPVELLQEIES 315
K++A P EAQ L D ++ D + +++ A EH + T L++E++
Sbjct: 199 KRIADPHEAQALDATIDTCQKQIIEDKAILDQLAIALSPMEHELATLQVKEAALVEELQQ 258
Query: 316 CNA 324
C A
Sbjct: 259 CRA 261
>03_05_0175 +
21513767-21513903,21534361-21535385,21537375-21537547,
21537849-21538679
Length = 721
Score = 30.7 bits (66), Expect = 0.73
Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 2/110 (1%)
Frame = +1
Query: 148 KVAAPVEAQKLSDIMSEEFARDLQVREEIKFAEHLS--EHHVGTSNEVPVELLQEIESCN 321
K A PV+ Q+ D +E ++ ++E + + L+ EH +G + +V + +Q++
Sbjct: 126 KSAIPVQKQE-EDEAEKEI---IEAKDEEQHGDKLASQEHDIGENGDVDAQGVQQVADGE 181
Query: 322 AKEYCDSDAIIAKVLQCQFDREHDDEIKRVEKKRNGDAKVSVSYDNYRNV 471
E + AKV + D E DE + +++ A S S D+ R V
Sbjct: 182 TMEAKSEEQNEAKVTSMEHDIEEGDE--KASREQGNRALPSCS-DHLRGV 228
>08_02_1247 +
25578291-25578305,25579084-25579197,25579497-25579628,
25579726-25579854,25580024-25580421,25580503-25580602,
25580734-25580793,25580881-25580967,25581058-25581186,
25581260-25581559
Length = 487
Score = 26.2 bits (55), Expect(2) = 1.6
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 214 LQVREEIKFAEHLSEHHVGTSNE 282
L+ R + EHL EHHV TS E
Sbjct: 13 LRRRYSLNLPEHLPEHHVITSAE 35
Score = 21.8 bits (44), Expect(2) = 1.6
Identities = 9/32 (28%), Positives = 17/32 (53%)
Frame = +1
Query: 256 EHHVGTSNEVPVELLQEIESCNAKEYCDSDAI 351
+ H+G S V ++ QEI +++ D A+
Sbjct: 75 DQHLGVSPRVSTQVDQEIHHQKSRKKADEGAL 106
>04_03_0675 -
18571495-18572055,18572465-18572966,18573774-18573829,
18574140-18574142
Length = 373
Score = 28.7 bits (61), Expect = 2.9
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Frame = +1
Query: 319 NAKEYCDSD-AIIAKVLQCQFDREHDDEIKRVEK--KRNGDAKVSVSYDNYR---NVPSH 480
+AKEY D A I + R K VEK + + D V D R ++P+H
Sbjct: 219 HAKEYGDLKLAQICGTIAADEKRHETAYTKIVEKLFEIDPDYTVLAFADMMRKKISMPAH 278
Query: 481 LIYDSEDDDDFE 516
L+YD +DD+ FE
Sbjct: 279 LMYDGKDDNLFE 290
>03_05_0817 - 27939192-27939584,27940806-27941561
Length = 382
Score = 28.7 bits (61), Expect = 2.9
Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 3/99 (3%)
Frame = +1
Query: 157 APVEAQKLSDIMSEEFARDLQVREEIKFAEHLSEHHVGTSNEVPVELLQEI-ESCNAKEY 333
A VEA ++ + + +F RD+Q A S + E E E +E
Sbjct: 135 ADVEAAEIGEGQTNDFLRDIQALRAKAVAASASAAAKPKAGAATAESGGETREEVPFEEL 194
Query: 334 CDSDAIIA--KVLQCQFDREHDDEIKRVEKKRNGDAKVS 444
CD D I+ K L ++ +E D+ + + G A V+
Sbjct: 195 CDEDKIMTFFKRLMSEWSQEMDEMPEAERRTAKGKAAVA 233
>01_01_0335 -
2706916-2706984,2707062-2707825,2710014-2710053,
2710105-2710173,2710268-2710336
Length = 336
Score = 28.7 bits (61), Expect = 2.9
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = -1
Query: 192 HDIRQLLRLYWCCHFFPRIRHDYLV 118
H ++ YWC H+F RI + V
Sbjct: 151 HPVQTYAMYYWCFHYFKRIMETFFV 175
>09_04_0141 + 15036249-15036339,15036834-15037768,15037968-15038081
Length = 379
Score = 27.9 bits (59), Expect = 5.1
Identities = 26/94 (27%), Positives = 41/94 (43%)
Frame = +1
Query: 127 VMSNPWKKVAAPVEAQKLSDIMSEEFARDLQVREEIKFAEHLSEHHVGTSNEVPVELLQE 306
VM+ VA E +++D + FA DLQ+ E I+F S H G + V +
Sbjct: 42 VMAGNSSMVAKMDEVSRVADDLM--FAEDLQLEEVIRF----SAHSAGPNCAVCGQATPS 95
Query: 307 IESCNAKEYCDSDAIIAKVLQCQFDREHDDEIKR 408
+++ + CD I Q D H DE+ +
Sbjct: 96 VDASWKPDNCDHVMCITCFGQLASD-SHADELPK 128
>05_07_0268 + 28830373-28830435,28830632-28830736,28831055-28831975
Length = 362
Score = 27.9 bits (59), Expect = 5.1
Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Frame = -2
Query: 356 AIIASESQYSFALQLSISCNNSTGTSLEVPTWCSERC----SANFISSLT*RSLANSSDM 189
A+I S+++ S SC++ST T E+P + S A SS SL+ SSD
Sbjct: 170 AVIRSKARGGRPRSPSYSCSSSTVTDDELPPFSSSDGEGGEGAETRSSTLFSSLSISSDS 229
Query: 188 ISDSFCASTGAAT 150
SD F STG +
Sbjct: 230 TSD-FYNSTGGGS 241
>01_06_0847 + 32411521-32411619,32411737-32411851,32412292-32412375,
32412430-32413478,32414690-32416371,32416477-32416586,
32417634-32418430,32418839-32418951,32419147-32419194,
32419425-32419652,32419732-32419829,32419967-32420019
Length = 1491
Score = 27.9 bits (59), Expect = 5.1
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +1
Query: 271 TSNEVPVELLQEIESCNAKEYCDSDAIIAKVLQCQFDRE 387
T N V V LL+ +ESC +EY + I+ L F+R+
Sbjct: 1317 TYNNVVVRLLKILESCTCEEYSAALLILLSQLGRIFNRK 1355
>12_02_0641 +
21450262-21450603,21450691-21450963,21451600-21451869,
21452071-21452368,21452455-21452921
Length = 549
Score = 27.5 bits (58), Expect = 6.8
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = +1
Query: 373 QFDREHDDEIKRVEKKRNGDAKVSVSYDNYRNVPSHLIYDSED---DDDFE 516
+ D E +D+ ++KR G +KV S + + DSED D+++E
Sbjct: 170 EIDEETEDDEPSAKRKRGGGSKVDKSKKSKSGSQKMMSSDSEDGSSDEEYE 220
>12_02_0638 +
21439600-21439941,21440029-21440301,21440938-21441207,
21441409-21441706,21441793-21442259
Length = 549
Score = 27.5 bits (58), Expect = 6.8
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = +1
Query: 373 QFDREHDDEIKRVEKKRNGDAKVSVSYDNYRNVPSHLIYDSED---DDDFE 516
+ D E +D+ ++KR G +KV S + + DSED D+++E
Sbjct: 170 EIDEETEDDEPSAKRKRGGGSKVDKSKKSKSGSQKMMSSDSEDGSSDEEYE 220
>11_04_0364 - 16791774-16792490,16792545-16793561,16793856-16793920,
16794787-16796964,16797065-16797322,16799815-16800172
Length = 1530
Score = 27.5 bits (58), Expect = 6.8
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = -2
Query: 323 ALQLSISCNNSTGTSLEVPTWCSERCSANFISSLT*RSLANSSDMISDSFCASTGAAT 150
A+ L +S N+ GT+ PT C C N + ++ +SF ++T AAT
Sbjct: 1130 AMGLQVSLNHGIGTTTVTPTKCLVNCFDN--------DTGVNHAILEESFASTTAAAT 1179
>09_04_0308 +
16567361-16568854,16568946-16569068,16569372-16569649,
16570316-16571924,16572363-16573781
Length = 1640
Score = 27.5 bits (58), Expect = 6.8
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = -2
Query: 323 ALQLSISCNNSTGTSLEVPTWCSERCSANFISSLT*RSLANSSDMISDSFCASTGAAT 150
A+ L +S N+ GT+ PT C C N + ++ +SF ++T AAT
Sbjct: 697 AMGLQVSLNHGIGTTTVTPTKCLVNCFDN--------DTGVNHAILEESFASTTAAAT 746
>03_06_0638 +
35222994-35223265,35223521-35223610,35224189-35224349,
35224701-35224770,35224871-35224925,35225413-35225496,
35225960-35225998,35226503-35226549,35226723-35226834
Length = 309
Score = 27.5 bits (58), Expect = 6.8
Identities = 15/32 (46%), Positives = 16/32 (50%)
Frame = -3
Query: 346 RQSHNIPLRCSFLFLVTTQLELH*RYRHGAQR 251
R H PLRC L L + L L R HGA R
Sbjct: 13 RPHHTHPLRCGGLSLSFSPLSLRLRGLHGAAR 44
>01_06_0848 +
32426550-32426613,32427013-32427167,32428470-32428526,
32428877-32428930,32429349-32429418,32429951-32432034
Length = 827
Score = 27.5 bits (58), Expect = 6.8
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 412 EKKRNGDAKVSVSYDNYRNVPSHLIY 489
+++R +V S+ NY N+P HL Y
Sbjct: 323 QQQRLAQVQVQPSHQNYLNLPPHLFY 348
>05_05_0252 -
23621592-23621912,23621958-23622317,23622979-23623059,
23623262-23623633
Length = 377
Score = 27.1 bits (57), Expect = 8.9
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +1
Query: 142 WKKVAAPVEAQKLSDIMSEEFARDLQVR 225
WKKV +P++ L + ++FAR L++R
Sbjct: 64 WKKVCSPIKMGGLGVLDLDKFARALRLR 91
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,656,856
Number of Sequences: 37544
Number of extensions: 217475
Number of successful extensions: 660
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -